Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi892g00001 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGGTGATGATCTTTTAGGTATGAATATGAATGATGATGCATCTGTGTTCTATGCTGATTTTCCTTCTTTACCTGATTTTCCATGCATGTCATCAGCATCATGTTCATCATCATCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAATGATAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCATCTATAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCGGCTTCGATTTTTCAGACCGATGAAGAAAACCCTTTAGTTGACGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTGGTGCATGATGATGGCGAAACAAAACCAGACCTTAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTAAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCTTGTTCATCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAATCAAAACACAACAAGCCCTTGTTTTAACCAAACTTCATGGATAGATCAAACACAAACACAATCACAAACGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAACCGATGGTTGGAGTTGGATATGTTGGTGATGTCCATTACACAAATGGTTCCGTTTCGAATAATATTAACCATAATATTAACCTTTATCAGCATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAAGCGTCGTTTGTAGATAGCAACATTGTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGCGTCGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACAATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGATTTTGTAAAAGCTAATGGACTTCAAGAGGGAGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACACACCATCCTCACCAAAGAGGAGGAAATGA 2262 0.3996 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDGDDLLGMNMNDDASVFYADFPSLPDFPCMSSASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHGEKMKSCDDNNDNNQGFLNMHDPLDHHGQHAITLASTPSIEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPASIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVVHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNLVHQQPQPQFQDLCPNQNTTSPCFNQTSWIDQTQTQSQTPLVVPPQQFSQPMVGVGYVGDVHYTNGSVSNNINHNINLYQHGSGNEYHQFNVVPSYNQASFVDSNIVQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNASDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDTPSSPKRRK 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi892g00001 753 ProSiteProfiles B3 DNA-binding domain profile. 604 708 IPR003340 GO:0003677
Vivi892g00001 753 MobiDBLite consensus disorder prediction 725 744 - -
Vivi892g00001 753 MobiDBLite consensus disorder prediction 708 753 - -
Vivi892g00001 753 Pfam B3 DNA binding domain 605 703 IPR003340 GO:0003677
Vivi892g00001 753 MobiDBLite consensus disorder prediction 710 724 - -
Vivi892g00001 753 SMART B3_2 604 706 IPR003340 GO:0003677
Vivi892g00001 753 MobiDBLite consensus disorder prediction 557 594 - -
Vivi892g00001 753 MobiDBLite consensus disorder prediction 505 537 - -
Vivi892g00001 753 SUPERFAMILY DNA-binding pseudobarrel domain 603 701 IPR015300 -
Vivi892g00001 753 MobiDBLite consensus disorder prediction 569 587 - -
Vivi892g00001 753 CDD BfiI_C_EcoRII_N_B3 602 705 - -
Vivi892g00001 753 Gene3D - 595 716 IPR015300 -
Vivi892g00001 753 FunFam B3 domain-containing transcription factor FUS3 600 717 - -
Vivi892g00001 753 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 282 722 IPR044800 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi892g00001 20 740 B3 DNA Binding Superfamily AT3G24650 43.906 1.67e-156 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi892g00001 B3 4.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi892g00001 K09287 - gmx:100810343 756.903