Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi890g00021 ATGGCACTTTTCTCAACTAACATCAAGCTGCTTGTTGTGCATCATGACGCTATTCTTCTTGATCAAATTCAACAAATGTGTGACCGATGTCATTATCAACTAACCATATGCACTTCACCTTATTACGCTCTTCATCTTCTTGCCGAAAGAAATGATTATTTTGATATGATGCTGATTGATGTTTGTATGCCAAACATGGATTCCTATGAGTTTCTTCAATATGTAACAATACAACACAGAATCCCTGTCATTGTGATTTCTTCTGATGGCACAAAAAGTTCTGTCATGAATTCTGTAATTTACGGAGCTTGTGATTACTGGGTTCAACCTTTGCATGAGAAACAATTCAAGACCATGTGGCAGCACGTTGCAAGAAACAATTTCAATGAGAATAAAGCTGAACATCAAGTTCTTGGATTCTTGGATGCTCAAAGCCCTAAAGAAGATGAAGTTGTTGGATTCTTGAAAGCACAAAGCCCTAATGAACCTGATGCTGTTGGATTCTTGAAAGCGCAAAACCCTAGAGAACATGATGCTGTTGGATTCTTGAAAGCACAAAGCCCTAATGAACATGATGCTGTTGGATTCTTGGAAGCGCAAAACCCTAGAGAACATGATGTTGTTGGATTGTTGGAGGCTCTTCAGCATGAAAGAAAACGGGAGAGAGAAGATGATAAGCCTCCAAAAGACAAAAGTGGAAAAAAGAGTCGGTTATCATGGACGCCGCAACTGCACCAACAGTTTCTAAATGCTGTTAACCAAATTGGCTTTGATGAGGCAAAACCTAGAAAGATTCTCAAAAGAATGGGTATTTGTGGTTTAACAACAGCTCAGGTTGCAAGTCATTTGCAGAAATATAGAAACTATTTGAAGGGACCATCTTGTGGAAAAAAGTCAAACAAAAGTCAAAGAATAGACACTCCAACTAAAACAGCATCAGAAACTGAAGATGCTAACTCAGTGTTACATCATGAGGACCAAACTCGTCAACTGAACTCAACCCTTCAAAGTTACAATATCTCTGAAACACAACAACATTCAACTGATGTTACTGATTATCAAGATTCTGACATCGGCTATAATTATGAAGCACAAGAGCATTCAATTGATTATCAAGTTTCCGACATTATGTGTGATCCATCAGACTTGTCCATAGATTATGATGAGTTAATGTCGTTATTATCATGCTAG 1191 0.3795 MALFSTNIKLLVVHHDAILLDQIQQMCDRCHYQLTICTSPYYALHLLAERNDYFDMMLIDVCMPNMDSYEFLQYVTIQHRIPVIVISSDGTKSSVMNSVIYGACDYWVQPLHEKQFKTMWQHVARNNFNENKAEHQVLGFLDAQSPKEDEVVGFLKAQSPNEPDAVGFLKAQNPREHDAVGFLKAQSPNEHDAVGFLEAQNPREHDVVGLLEALQHERKREREDDKPPKDKSGKKSRLSWTPQLHQQFLNAVNQIGFDEAKPRKILKRMGICGLTTAQVASHLQKYRNYLKGPSCGKKSNKSQRIDTPTKTASETEDANSVLHHEDQTRQLNSTLQSYNISETQQHSTDVTDYQDSDIGYNYEAQEHSIDYQVSDIMCDPSDLSIDYDELMSLLSC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi890g00021 396 Pfam Response regulator receiver domain 11 118 IPR001789 GO:0000160
Vivi890g00021 396 Gene3D - 232 292 - -
Vivi890g00021 396 MobiDBLite consensus disorder prediction 215 242 - -
Vivi890g00021 396 Pfam Myb-like DNA-binding domain 238 287 IPR001005 -
Vivi890g00021 396 SUPERFAMILY CheY-like 7 131 IPR011006 -
Vivi890g00021 396 MobiDBLite consensus disorder prediction 292 322 - -
Vivi890g00021 396 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 319 IPR045279 GO:0009736
Vivi890g00021 396 FunFam Two-component response regulator 231 293 - -
Vivi890g00021 396 SMART REC_2 8 120 IPR001789 GO:0000160
Vivi890g00021 396 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vivi890g00021 396 NCBIfam myb-like DNA-binding domain, SHAQKYF class 235 288 IPR006447 GO:0003677
Vivi890g00021 396 CDD REC_typeB_ARR-like 11 124 - -
Vivi890g00021 396 MobiDBLite consensus disorder prediction 295 316 - -
Vivi890g00021 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 291 IPR017930 -
Vivi890g00021 396 MobiDBLite consensus disorder prediction 215 236 - -
Vivi890g00021 396 SUPERFAMILY Homeodomain-like 233 291 IPR009057 -
Vivi890g00021 396 Gene3D - 6 138 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi890g00021 4 273 Response Regulator Gene Family AT4G16110 31.273 1.66e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi890g00021 Response_reg 1.7e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi890g00021 - K14491 vvo:131604459 681.404