Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi890g00006 ATGGGGAGTTTCTTGCTTGACTTGGCGAAACCATATGTGGAGCAATTGGTAAATAAGGTGATTGCAGAATCAAGGTATATTTGTTGCTTCACATGCATTGCTAAGGATTTCGAAGAAGAAAAAGTTAGATTAGAAGTAGAAAGGGCAACTTTTGAGCGACACATTGAAGAGGCAACAAGAGGAGGGGAAGTTATTCTACCTGATGCTCGTGCTTGGAAAGAAGAAGTTGATCAGCTCATTCAAGAAGATACCAAAAAAAGACAAAAATGTTTTTTTGAATCCTGTCCTCATTGCTTATGGAGATATACTAGAGGAAAATTTCTTGTAAATAAGAAGGAGCGAATTAAAATATTGATGGCAACAAGAAAGGAACTTACAATTGGACTCCCTGCTCATCTTCCTGATATTGAACGATACACGACCCAACACTATGTGCATCTTAAAAGCAGAGAAACTCAATACACAGAGCTTTTGGCTGAACTCAAAGATGACAACAATTATATAATTGGGTTGCATGGAATGGGGGGTACAGGTAAAACTACATTGATCAAGAAAGTGGGTAAGGAACTTAAGGAATTAAAACAATTTACTCTGGTCATTGTTACGACAGTGTCATCATCTCCCAATATTAAAAAGATTCAAGATGATATTGCCAAGCCTTTGGGATTGAAATTTGATAACTGCAATGATACAGATCGACCTGAAAAACTATGGAACAGATTAACCAATGGTGAGAAGATTCTTCTAATATTGGATGATGTGTGGGACAAACTCAATTTTGAAGAAATTGGAATTCCGTCTAGTGACAATCACAAAGGTTGTAGGGTTATTATAACCACACGCAGTCAGTTGGTGTGCCACAAATTAGGGTGCAATAAGATAATCCAACTAAATCTCATATCTAAAGAAGATGCATGGATCATGTTCAAAAAGTATGCCGATCTATGTGAAACCACCTCAACGCAATTTTTTCTTGACAGGGGCCGTAAAATTGCAAATGAATGCAAAAACCTACCTATTGCAATTGTTGTTATCGCTAGTAGTTTGAAGGGCAAAAAACTTCAGCAACATCGAGAGGAATGGGACATGGCCTTAAAATTCTTAAAAAAAGACATCTCAAGGCACAAGGATGATGATGACGTTCTTGAAATTTATAAATGCTTGAAGTTTAGCTATGATAAGTTGGATGAAGAGGCCAAGAATCTATTCCTTTTGTGTTCTGTATTTCGAGAAGATGAAGAAATTCTAATTGAAAGTTTAGCTAGACATGCCATCGGAGGAGGCCTTTTTGGGGAAGTTTATGGCAGCTACGAAGAAACCCGAAGACAATTAGTTATATCCAAAAACAAACTCCTAGATTCTTGTTTATTGTTGGAGGCCGGTCAAAGGAGAGTGAAAATGCACGACTTCGTTCGTGATGCAGCCCAATGGATAGCGAACAAAGAGATTCAAACAAGAAAAGTGTATGACAAAAATCAAAAGGAAATGATTGAAGAGGAGAAAAATCTTAAATATTTGTTATGCGTAAGCGATGTAAAGGAGATCTTTTCTTGTAAGTTTGATGGTTCCAAGATTAAGATTCTAATTGTCATCATGCATATGCCTTTTCATGGAGAAATTGAAGTCCCAAATTCATTTTTTGAAAATAATACCAGCCTTCGAGTTTTTAATTTACGTAGTGGTCTTGGTTGCGCAGCTATTATATCATTACCTCAATCAATGCAACAATTGAAGAATATCCGATCTCTTATGTTTGCACAGTGTCTTTTGGGTGACATCTCTATCTTTGGAAAGCTGCAAAGTCTTGAAGAACTTGATTTGTATCTATGTGAAATTAATGAATTGCCTAATGAAATTGCAGAACTAAAGAAATTTAGATTTTTGAAATTGGAATGGTGTACATTTGGTGGGAATAATCCATTTGAAGTGATTAAAAGATGCTCATCACTTCAAGAGTTGGTCGTAAAATATAATTACGATATTCATGGAGAAATAACTTTCCCTAAATTGCAGTGGTTTCATGTAAGTGATGAAGATACAACTTATTCTTCACTGTCAAAGTATGTGTCTATGATATATTCGGATAATAAGGTTTTCCTATCTGAAACAACACTCAAACATTGTATGCAAGAAGCAGAGGTTCTTAGACTAACAAGTATTAAGGGGGAATGGAGAAATATCATACCTGATATTGTTCATATGGATCACGGTATGAATAATCTTGTTGAGCTTGACTTACATTCCACTTCACAACTAAAGTTCCTTATTTACACTAAGGATCCTCATTCTCAAATATCAAATGTTTTCTCCAAGTTGGTTCGACTAGTTCTGAATGATATGGACAGTTTGGAAGAATTGTGCAAGGGTTCTTTTTCTGCTGACTCTTTTAAGAGTTTAGAGAGTCTATCTATATTTAATTGCAAACAGTTGCGAAGCTTATCAAGGATTGCAAACCAATGCAATTTAAAGAGTGTGTCATTGATGAATTGTCCCATGTTGAGCTCCTTATTTGAAGTGTCAACTTCTCATAATCTAGTGTTGTTGGAGATATTGATAGTAATTGATTGTCAGAATCTTGAATACTTAATAAAAGATGAAAGAAAAGGGGAAACATTTGAAAGCAACAGTAGCAATCCAATGTTTATGAAATTGAAAGATCTCATAATTGCGGGCTGTCCAAAATTTGAAATAATATTTCCGCTTATCTCTGCTCATGATCTTCCTGCACTAAAATCTGTAGGGGTGGAAAGATGTGATAAGTTGAAATACATATTTGGTCAATATGTCAAACTTGGGTCCCTAGAAGATATGAAGCTTGGCTGTGTACCCAATTTTATTGACATTTTTCCAGAATGTAATCGTACAATGTCTTTCTCCATTAACAGGTCATCTCCTATTTCAATATCTGCTTCCAAGCCAACTACACACTCAAACACTATCAAATGGAGCATCTTGTCATGGACTGATATGTATTGTTGTGGTAAAAAATTGAGGAGTACCACAAGTTCTAAACTTCCATTGATTGATGAGAATCAACCGCACACTAAAGTAATGGAATCAAACTCAAATTGTCTTAGCATAAACATATGGGAGCGTGCTCAATGTCTTTCAAGACAATCAAAGATCATGTGCAATATTAAAAAGATTGAGTTGAGTAATTTGAAGAAGATAAAATCAGTATTTGTCCTATCTATTACTCCAAAAATGTTATTGGAAACTTTGATACTTGAAAAATGTCATGAATTGAAGCACATCATAATAGACACGGGAGATCACGATAGTACAGGTGGAAATACCCTTGGCAATGTGTTCCCAAAATTAAAAGAGCTTACCATTAAGGATTGCATGCAATTAGAGTACATATTTGGACACTACACTAATGATCATCAAAACCACACTGAATATCATCTTCATCTTTCGTCATTGGAACGTGTCTATCTTTGGGAGCTGCAAAGCTTAGTTGCCATTTGCCCCAAACAATATCATATAACATTGCCAGTTTTGAATCAACTTGTACTCAAATATTGCTCGTGGGATGCTAATATAAAGTCTTTTGGTACAATCATGAAGGATTTGCTTGCTTTGGAAGACCTTGTGTTAACTAACTCCAAAATAGAAAGTATATTTTGTGTCAATGAAGTAAATGAACAACAAGTGAACATAGGATTGCAAAATATTGAGTTGGAAAATTTGAATGTGATGGTGTGTCCTTTTGTGGGTCCCAAAAATTCTTTTTTCCTCCCGAATCTAACAAAGATGAGAATTATTGGATGTGAAAAATTGCAAATAATTTTCCCTGCTTCTATATTAAGATACCTACCACAATTGGATGAGTTAATGATAGGTGACTGTGAGGAGTTGCAACATATCTTCCAAGATGATTTGGAGAATCAAAACATGTCGTCTTCAACAACATGCTTCCCAAAGCTAAAAGCACTTTCTGTAAAAAAATGCAATAAATTGAAATATGTGTTTCCAGTCTCTATTTGTAACCAACTTCCTGAGTTAAGGGTTCTAATCATAACAAAAGCAAAAGAGTTAAAGGAAATATTTAAAAGTAGTCAAGGTGATGGAATTGAGATTGTCAGGATTCCAAATTTGTATTTTGTAGCAACTGTGGGTCTACCAAGCCTCTTCCAGACACAGGAAATTCAATTTCAGAGAGCTGAATATCGTTTAATAAAGAATTGTGATAAACTCTCTTTGACTTCAACAACAAGAATACCCCACTTCTGGAGTTTTTCTCATGATATTCCAGATTTTGAAAGGAATTCTTATTTGTACAATCGAATTCAAGAGTTAGTTACTGAGATTGAAGTTGAAGCAGCATCAAAAAATAAGTGGACTTCTCCACAGTTGAAAGTAAAACAAACACAAAAGACAGACAAAGAACTTGTTGAAAATGTTGCTGGTCAAGTGACACCATTAGTAGCAAAACTACCAACAAATTCAGAAGCACCGAGGAATGAACAATCAGTTGATCAACAAAGTCCACTTGAAGAAACTGATGCTACTGTCACACCTTCACACTTGGAGGGTTCAATGTCTGAAAAAGCTGTAGGAACAAAGAATGTGTCACCTAAACAAAAGGAGTTGTTAAATGAACAATCAACAACCCAAGGAGAATCTCATGCTACAATTAAACCTTCTCAGGAAAACAATGGTTCAAGGTCAGAAAAAATAGCAGCAGCCAATTTGTCCACCAATTCAGGAACAAAGAATGAGTCACCTATACAAAAGGGTGTCAAGATAAGTGTTGAACAAGGAGCTACATCAACCAATTCCATAGAAATAACATCATCAGGTCCAACAGTTACTTCTGAGCATAATAGTTTATCACAGGCACCAATTAATGAACGAACAATGGATCAACAAACTTCACTTGAAGAAACTGATGCTACTGTCACACCTTCACAGGAGTTGATAAATGAACAATCAACGACCCAACAACAATCACGTGGAGAATCTCAAGCAACAATTAAACCTTCTAAGGGAAACAATGGTTCATCGTCAGAAAAAATAGCAGCAGCAACTTTATCCCCCATCTCTGAAACAAAGAATGAGTCACCTAAACAAAAGAAGGATATCAAAATAAGTGTTGAAGGAGGAGCTGCATCAACTAATGTTAAGACATTAGCAGCATCAACTTCTAAGCGTGAAAAACTTTCTCATGAATATGGTAATGGCCAAACAGCCATTCAATCTTTTTCAATTTCCACAAAAGAGCCACTTGCTATGGATGTTGTTGATCATGGAGGCCCACTGCAAACAAATCAGATTAAAAATCTAGGGGACACTTCTCAAATAGTAGAAGATTCAGGTTCTTCTTTATTTGTCAGGAGGGAGCTTGAGCAACTAGTCTCTGAGAATCATTTGAATTATGAAACCTTGTCTCTATTGACAGATTTCTTTGTGAAGCATCCTTCTATTCTTTTAAAGGATGCTTTACTGACTAATAGATTCAAGGGTTATGCCTACACTTGCCTTGCAGATTTGTTGAAATTCCTCCTAACACATAGTGTGTTGGATGTCTTAGGTTCAAGTCATTCTGAATTTGTTAACTTATTACAAGTTATGCGCAATTTTCCTTTTAACAACGATTGGTTGGATGGTGTTGAAAAACGCGCTTTATTTCCTGATTTACAATTCTCTCAAGATGCGATGCAAAAACTATTGGATTCTAAGAAACAAGTTACCAAGGAAGTCGAAGAGATGCGTTTGAAGTTGTATTTTGTCAATCAACATGCAGAAGATATCAAGCATCAATTGAGATCCTCCGAAGCTGTATTGGCGAGTATCATTAAACAAGAGGAACAGGTTTTAGAAACTACAGCAGCTTTAAGTGTTCCTCTTGGCTATTAG 5862 0.3574 MGSFLLDLAKPYVEQLVNKVIAESRYICCFTCIAKDFEEEKVRLEVERATFERHIEEATRGGEVILPDARAWKEEVDQLIQEDTKKRQKCFFESCPHCLWRYTRGKFLVNKKERIKILMATRKELTIGLPAHLPDIERYTTQHYVHLKSRETQYTELLAELKDDNNYIIGLHGMGGTGKTTLIKKVGKELKELKQFTLVIVTTVSSSPNIKKIQDDIAKPLGLKFDNCNDTDRPEKLWNRLTNGEKILLILDDVWDKLNFEEIGIPSSDNHKGCRVIITTRSQLVCHKLGCNKIIQLNLISKEDAWIMFKKYADLCETTSTQFFLDRGRKIANECKNLPIAIVVIASSLKGKKLQQHREEWDMALKFLKKDISRHKDDDDVLEIYKCLKFSYDKLDEEAKNLFLLCSVFREDEEILIESLARHAIGGGLFGEVYGSYEETRRQLVISKNKLLDSCLLLEAGQRRVKMHDFVRDAAQWIANKEIQTRKVYDKNQKEMIEEEKNLKYLLCVSDVKEIFSCKFDGSKIKILIVIMHMPFHGEIEVPNSFFENNTSLRVFNLRSGLGCAAIISLPQSMQQLKNIRSLMFAQCLLGDISIFGKLQSLEELDLYLCEINELPNEIAELKKFRFLKLEWCTFGGNNPFEVIKRCSSLQELVVKYNYDIHGEITFPKLQWFHVSDEDTTYSSLSKYVSMIYSDNKVFLSETTLKHCMQEAEVLRLTSIKGEWRNIIPDIVHMDHGMNNLVELDLHSTSQLKFLIYTKDPHSQISNVFSKLVRLVLNDMDSLEELCKGSFSADSFKSLESLSIFNCKQLRSLSRIANQCNLKSVSLMNCPMLSSLFEVSTSHNLVLLEILIVIDCQNLEYLIKDERKGETFESNSSNPMFMKLKDLIIAGCPKFEIIFPLISAHDLPALKSVGVERCDKLKYIFGQYVKLGSLEDMKLGCVPNFIDIFPECNRTMSFSINRSSPISISASKPTTHSNTIKWSILSWTDMYCCGKKLRSTTSSKLPLIDENQPHTKVMESNSNCLSINIWERAQCLSRQSKIMCNIKKIELSNLKKIKSVFVLSITPKMLLETLILEKCHELKHIIIDTGDHDSTGGNTLGNVFPKLKELTIKDCMQLEYIFGHYTNDHQNHTEYHLHLSSLERVYLWELQSLVAICPKQYHITLPVLNQLVLKYCSWDANIKSFGTIMKDLLALEDLVLTNSKIESIFCVNEVNEQQVNIGLQNIELENLNVMVCPFVGPKNSFFLPNLTKMRIIGCEKLQIIFPASILRYLPQLDELMIGDCEELQHIFQDDLENQNMSSSTTCFPKLKALSVKKCNKLKYVFPVSICNQLPELRVLIITKAKELKEIFKSSQGDGIEIVRIPNLYFVATVGLPSLFQTQEIQFQRAEYRLIKNCDKLSLTSTTRIPHFWSFSHDIPDFERNSYLYNRIQELVTEIEVEAASKNKWTSPQLKVKQTQKTDKELVENVAGQVTPLVAKLPTNSEAPRNEQSVDQQSPLEETDATVTPSHLEGSMSEKAVGTKNVSPKQKELLNEQSTTQGESHATIKPSQENNGSRSEKIAAANLSTNSGTKNESPIQKGVKISVEQGATSTNSIEITSSGPTVTSEHNSLSQAPINERTMDQQTSLEETDATVTPSQELINEQSTTQQQSRGESQATIKPSKGNNGSSSEKIAAATLSPISETKNESPKQKKDIKISVEGGAASTNVKTLAASTSKREKLSHEYGNGQTAIQSFSISTKEPLAMDVVDHGGPLQTNQIKNLGDTSQIVEDSGSSLFVRRELEQLVSENHLNYETLSLLTDFFVKHPSILLKDALLTNRFKGYAYTCLADLLKFLLTHSVLDVLGSSHSEFVNLLQVMRNFPFNNDWLDGVEKRALFPDLQFSQDAMQKLLDSKKQVTKEVEEMRLKLYFVNQHAEDIKHQLRSSEAVLASIIKQEEQVLETTAALSVPLGY 1953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi890g00006 1953 MobiDBLite consensus disorder prediction 1484 1512 - -
Vivi890g00006 1953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 406 IPR027417 -
Vivi890g00006 1953 Gene3D Ribonuclease Inhibitor 444 697 IPR032675 -
Vivi890g00006 1953 MobiDBLite consensus disorder prediction 1476 1558 - -
Vivi890g00006 1953 Gene3D Ribonuclease Inhibitor 1043 1370 IPR032675 -
Vivi890g00006 1953 FunFam Probable disease resistance protein At1g61300 132 293 - -
Vivi890g00006 1953 MobiDBLite consensus disorder prediction 1519 1558 - -
Vivi890g00006 1953 Gene3D - 300 396 IPR042197 -
Vivi890g00006 1953 PRINTS Disease resistance protein signature 241 255 - -
Vivi890g00006 1953 PRINTS Disease resistance protein signature 335 349 - -
Vivi890g00006 1953 PRINTS Disease resistance protein signature 168 183 - -
Vivi890g00006 1953 PRINTS Disease resistance protein signature 736 752 - -
Vivi890g00006 1953 SUPERFAMILY RNI-like 1074 1347 - -
Vivi890g00006 1953 SUPERFAMILY L domain-like 466 923 - -
Vivi890g00006 1953 Gene3D Ribonuclease Inhibitor 698 868 IPR032675 -
Vivi890g00006 1953 MobiDBLite consensus disorder prediction 1590 1672 - -
Vivi890g00006 1953 Coils Coil 34 54 - -
Vivi890g00006 1953 Gene3D - 133 296 IPR027417 -
Vivi890g00006 1953 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 932 1379 - -
Vivi890g00006 1953 Pfam NB-ARC domain 157 393 IPR002182 GO:0043531
Vivi890g00006 1953 Coils Coil 1888 1908 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi890g00006 169 836 WRKY Transcription Factor Family AT5G45050 24.029 2.44e-09 60.8