Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi889g00001 ATGGGGAGGTCACTAGACATTTTTCTTTTTATTCTTTGTTTAGCAATCATCACTCCTACCTTGAATGCCAATATATTAGAGAGCAGTGAGTATTGGAAAGAACAACGACCTGAGTTTGATTCATATTGGCAGGAAAGGGCTAAAATTGCAAAACAAGATAATCATGCAGCTTATTTTCCTGATCCTTATGCAGTCTCTGGAAATTTTACAGCATCTATCTCCGAAATCATAGCTGGAAAGAGCACAAGAAGGAACTTGAAGGGAGGAAAAGGAGGAAAATGTTTGGCCACAAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAATTGGGCTAACAATCGCCAGAAGCTAGCCGACTGTGTCCAAGGCTTCGGCAGAAATACCCGTGGAGGTAAAGGTGGTCCAATCTACGTTGTCACCGATCCCTCCGACACCGAATTGTTGAACCCAAGACCCGGCACTCTTCGTCACGCGGTCACCCGTAACGGTTCCCTTTGGATCACATTCGCTCGGAGCATGATGATCACACTCCAACAAGAGCTTATCATGACAAGCGACAAGACCATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGAGCCGGAATTACTATCCAATTTATTAAGAATGTTATCATCCATGAAATCAAGATTTACAACATTCAAGTCCGTGAAGGCGGCATGATTATAGATTCTGAGAGCCATTATGGTATCAGGACTAGGAGTGATGGTGATGGTATTTCCATCTTTGGTTCTAGTAATATTTGGATTGATCATGTTTCGATGAGAAATTGTACTGATGGTTTGATCGACGCAATCATGGGTTCGACTGCTATTACCATCTCGAACGGCCATTTCACCGACCACAACGAGGTGATGCTTTTCGGTGCTAGTGACTCGTACACCGACGACAAAATCATGCAAATCACATTGGCATTCAACCACTTTGGAAAGAGATTAGTCCAAAGAATGCCAAGAGCGAGATTCGGTTTTGTCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTAACCCTACCCTTATTAGTGAAGGTAACAGATTCATTGGCCCTGAAAACAAATTTGTAGGCAAGGACCAAATCAATGCTAAAGAGGTAACAAAGAGAGAATACACAGAAGAAAAAATATGGACAAGTTGGCAATGGAGATCGATCAACGACGAGTTTTTGAACGGAGCATACTTTGTAAACTCCGGACCGGAGCTAAAGAACAGACCGTTTTCAAGGAAAGACATGATCACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACAAGGTATTCTGGAATCCTAGGATGCCGTGTTGGTCAACCTTGTTAG 1365 0.4293 MGRSLDIFLFILCLAIITPTLNANILESSEYWKEQRPEFDSYWQERAKIAKQDNHAAYFPDPYAVSGNFTASISEIIAGKSTRRNLKGGKGGKCLATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDTELLNPRPGTLRHAVTRNGSLWITFARSMMITLQQELIMTSDKTIDGRGVDVYIANGAGITIQFIKNVIIHEIKIYNIQVREGGMIIDSESHYGIRTRSDGDGISIFGSSNIWIDHVSMRNCTDGLIDAIMGSTAITISNGHFTDHNEVMLFGASDSYTDDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSSNPTLISEGNRFIGPENKFVGKDQINAKEVTKREYTEEKIWTSWQWRSINDEFLNGAYFVNSGPELKNRPFSRKDMITAKPGSYVGRLTRYSGILGCRVGQPC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vivi889g00001 454 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vivi889g00001 454 PANTHER PECTATE LYASE 18-RELATED 51 452 IPR045032 GO:0030570
Vivi889g00001 454 Pfam Pectate lyase 181 363 IPR002022 -
Vivi889g00001 454 SUPERFAMILY Pectin lyase-like 98 445 IPR011050 -
Vivi889g00001 454 SMART amb_all 172 369 IPR002022 -
Vivi889g00001 454 Gene3D - 97 447 IPR012334 -
Vivi889g00001 454 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi889g00001 7 454 Polysaccharide Lyase AT1G14420 57.082 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi889g00001 K01728 - gmx:100798579 711.449