Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi888g00020 ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCCGGTTTTCGCTTTCACCCCACAGACGAGGAGTTGGTGATGTACTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTGATTTGTGAAACCGATGTTTACAAGTGGGATCCTGAGGATTTACCTGGGCAATCTTTCTTGAAAACTGGAGATAGGCAGTGGTTCTTTTTCTGTCATCGAGATAGGAAATATCCTAATGCTGCAAGGTCTAATCGAGCAACAAGACATGGCTACTGGAAAGCTACAGGAAAAGATCGTAACGTGATATTCAATTCTCGGTCAGTTGGAGTGAAAAAGACACTGGTTTTCTATATCGGCAGAGCTCCTAATGGGGAGCGAACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGTTTAAGAGATGCTACGATGTCAAGGGCTATTATGCACTATACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAACTGAGCGGGGGGCTCCAAATGCTGTTATGGACCCTCCTATTGGTCAGCTGCAGCCGTTGTTGGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTTCTTGAACCAGATTATGTGAATGGTTATGTTGACTTTCCGCAGGTTGTTAATGAAGAAACACAAAGTATGGTCATGGGTCAGTTCTCTGAGGCCATGATATTCCCTGATCCTGGTGGAAAATTACAATCTAGCAGTCAACATTATGATGTGCAGCCCAGCTTTGACTTCAATCAGTCAGTTACTTCACACTTTCATATTTCTGAAGCACCCGAGGTCACTTCTGCTTCCAACATTCAAAGCGAGGAGGAGCCTGTCTTTTATGAGGACGGCTTCTTGGAAATCAACGATCTCTTTGATACCGAACCTTCAGTTTCAAATTCGGAAAAGCATAATGACGATCTCTTTGATAACCTGCAGTTTGAAGATGGGTTAAGTGAATTTGATATGTACCAAGATGCAGATATGTTTCTTTGTGGCCTGGAGCCTATTTGCGACGAAGCAGTTTCACATGCATATATGAATAACGCTGGCAGCATTATTCAAAATCAGAGTCACCAGTTGCTGTCTGATGCAGAAGTTGCCAATCAAACTGTTGACGAATTCTGGATGCATGTTGAAAGAAACACCTGCAGTCCAACAGAAGACTTCAATGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCTGTATGCTTTCCTACCGAAAGCGCTGAAAATCAAAGTACTGTGGAAGATGTTGCTACTACAAGTAGATTGTCCTCTGCTCTCTGGGCTTTTGTTGATTCAATACCTACCACTCCTGCATCAGCCGCTGAAAATCCTTTGGTGAATCGGGCTTTGAATAGAATGTCTAGCTTCAGCATGATGAAGATGAAGCCCAGCGACATCACTGCAGGTATTGATACTACAACTATGAAGAGAGCAGGCAGAAAGGGAGTCTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGATACATCTCTCCTTGA 1698 0.4252 MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVICETDVYKWDPEDLPGQSFLKTGDRQWFFFCHRDRKYPNAARSNRATRHGYWKATGKDRNVIFNSRSVGVKKTLVFYIGRAPNGERTDWVMHEYTMDEEEFKRCYDVKGYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSTERGAPNAVMDPPIGQLQPLLDDEIDEIIKGMLDVEPVLEPDYVNGYVDFPQVVNEETQSMVMGQFSEAMIFPDPGGKLQSSSQHYDVQPSFDFNQSVTSHFHISEAPEVTSASNIQSEEEPVFYEDGFLEINDLFDTEPSVSNSEKHNDDLFDNLQFEDGLSEFDMYQDADMFLCGLEPICDEAVSHAYMNNAGSIIQNQSHQLLSDAEVANQTVDEFWMHVERNTCSPTEDFNGSFSLTNPGVVCDSVCFPTESAENQSTVEDVATTSRLSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSMMKMKPSDITAGIDTTTMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRYISP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi888g00020 565 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vivi888g00020 565 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vivi888g00020 565 FunFam Nac domain-containing protein 86 28 172 - -
Vivi888g00020 565 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 296 - -
Vivi888g00020 565 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Vivi888g00020 565 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi888g00020 4 563 NAC Transcription Factor Family AT1G34190 43.025 6.18e-138 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi888g00020 NAM 5.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi888g00020 - - mtr:25485018 919.842