Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi887g00009 ATGGGAAACAACTGTGTTGGTTCGGGAACCTCGCAATCAAGGGATGTATCATCACCCTGTGCAAGTCCTTCTTGCTGGCCGCTTGGTGGAACGAAGAAAGATACTTGTGATGCACATAAGACCAGTCCAACAAAAGCTATAGAAGCTGCTCCAAACAAGGCACCACCGGTAGTGAAAATTGAGAATGAGGATGTAAAGCCATCACCGCAACAAAAGGCGCAAACGAATGAAGGTGCTGTTGGTACACCTGCAAAACCAAAGAGACCTCAGAATGTGAAGAGACTAGCAAGTGCAGGACTCAAAGCAGATTCTGTTTTGCAGCGAAAAACGGTTAGTCTAAAAGAGTTTTATAATTTGGGACAAAAGCTTGGACAAGGGCAATTCGGAACAACATTTCTTTGTGTGGAGAAAGCAACTGGGAAAGAGTATGCTTGTAAATCCATCTTGAAGAGGAAGTTGTTGACAGAGGAGGATGTGGAAGATGTGAGGAGAGAGATTCAGATTATGCATCACTTGGCTGGGAGTCCAAGCATAGTTTCGATTAAGGAAGCTTCCGAAGATGCTGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCAGGTGGTGAGCTTTTTGACAGGATTGTGGAAAGAGGGCATTATACTGAGAGAAAAGCGGCTAAACTTGCACGGACTATTGTTGGTGTTATTGAGTCATGTCATTCTCTAGGAGTAATGCATCGTGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAGCAGGAAGAATCTCCTCTTAAGGCAATAGATTTTGGACTATCTGCATTTTTTAAACCAGGTGACATTTTCAATGATGTAGTAGGGAGTCCATATTATGTTGCACCTGAAGTCTTACGCAAGCGATATGGCCCTGAAGCAGATGTTTGGAGTGCTGGTGTCATCTTGTACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAGGAGATATTTGAGGCCATTTTGCATAGTGATCTTGATTTCACATCAGATCCATGGCCTGGTATATCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAGGTTGATGGAGCAGCCCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCATGAAACAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCCGAAGAAGAAATTGCTGGTTTGAAAGAAATGTTTAAGATGATCGACACGGACAATAGTGGTTACATTACGTTTGAAGAACTCAAGATTGGACTGAAAAAATTTGGTGCCAACCTCAATGAATCTGAAATTTACGATCTAATGCAATCTGCGGATGTTGATAATAGTGGTACAATCGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGATAGGGAAGATCATTTAGTCGCTGCTTTCTCATATTTTGATAAAGATGGAAGTGGATACATCACGCGAGATGAGCTTCAAAAAGCTTGTGAAGAATTCGGCCTAGGGGAGGTTGGCTTGGAGGAAATGATCCGAGAAGCCGATCAGAATAATGATGGACGAATAGATTACAACGAATTTGTGGCCATGATGCAGAGAGGGAATGCAGAAATCGGTAAGAGGGGTCGAAAGGGTAGCCGTAGTTTAAGCATTGCATTTAGGGAGGCACTACCAGTATGCTAA 1749 0.4242 MGNNCVGSGTSQSRDVSSPCASPSCWPLGGTKKDTCDAHKTSPTKAIEAAPNKAPPVVKIENEDVKPSPQQKAQTNEGAVGTPAKPKRPQNVKRLASAGLKADSVLQRKTVSLKEFYNLGQKLGQGQFGTTFLCVEKATGKEYACKSILKRKLLTEEDVEDVRREIQIMHHLAGSPSIVSIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNQQEESPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFTSDPWPGISESAKDLVKKMLVRDPSKRLSAFDVLRHPWIQVDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGYITFEELKIGLKKFGANLNESEIYDLMQSADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDKDGSGYITRDELQKACEEFGLGEVGLEEMIREADQNNDGRIDYNEFVAMMQRGNAEIGKRGRKGSRSLSIAFREALPVC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi887g00009 582 MobiDBLite consensus disorder prediction 1 20 - -
Vivi887g00009 582 SMART serkin_6 117 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi887g00009 582 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 549 - -
Vivi887g00009 582 CDD STKc_CAMK 116 374 - -
Vivi887g00009 582 FunFam Calcium-dependent protein kinase 1 383 557 - -
Vivi887g00009 582 CDD EFh 423 482 IPR002048 GO:0005509
Vivi887g00009 582 ProSitePatterns EF-hand calcium-binding domain. 537 549 IPR018247 -
Vivi887g00009 582 Pfam Protein kinase domain 117 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi887g00009 582 MobiDBLite consensus disorder prediction 1 91 - -
Vivi887g00009 582 ProSitePatterns Protein kinases ATP-binding region signature. 123 150 IPR017441 GO:0005524
Vivi887g00009 582 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Vivi887g00009 582 SUPERFAMILY EF-hand 414 555 IPR011992 -
Vivi887g00009 582 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Vivi887g00009 582 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Vivi887g00009 582 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Vivi887g00009 582 FunFam Calcium-dependent protein kinase SK5 203 387 - -
Vivi887g00009 582 CDD EFh 494 554 IPR002048 GO:0005509
Vivi887g00009 582 ProSiteProfiles EF-hand calcium-binding domain profile. 490 525 IPR002048 GO:0005509
Vivi887g00009 582 Gene3D Phosphorylase Kinase; domain 1 119 202 - -
Vivi887g00009 582 SUPERFAMILY Protein kinase-like (PK-like) 116 376 IPR011009 -
Vivi887g00009 582 FunFam Calcium-dependent protein kinase 1 119 202 - -
Vivi887g00009 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vivi887g00009 582 ProSiteProfiles EF-hand calcium-binding domain profile. 529 559 IPR002048 GO:0005509
Vivi887g00009 582 SMART efh_1 458 486 IPR002048 GO:0005509
Vivi887g00009 582 SMART efh_1 422 450 IPR002048 GO:0005509
Vivi887g00009 582 SMART efh_1 528 556 IPR002048 GO:0005509
Vivi887g00009 582 SMART efh_1 494 522 IPR002048 GO:0005509
Vivi887g00009 582 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
Vivi887g00009 582 Gene3D - 382 558 - -
Vivi887g00009 582 Gene3D Transferase(Phosphotransferase) domain 1 203 381 - -
Vivi887g00009 582 ProSiteProfiles Protein kinase domain profile. 117 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi887g00009 582 Pfam EF-hand domain pair 494 554 IPR002048 GO:0005509
Vivi887g00009 582 Pfam EF-hand domain pair 423 483 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi887g00009 51 573 EF-hand Containing Proteins AT3G10660 74.286 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi887g00009 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi887g00009 K13412 - gmx:100783079 959.518