Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi884g00006 | ATGGCGAAAACTAAGGGTTTCAACGTTCTCCACAACCTCATCCACATTGCCACCGAAATCTCTCAAATCTCCACCTTCCCTTCCCTCATCAAAACGCAATGCTTCGATCTCAGCCGTAGGATCACTTTCCTCATTCCTTTATTTCAACACCTCGTCAACGACGTCGTTTTGGTTCCTTACGAAGCTCTCGTTTCGCTACAAGAAGCTTTTCTTTCTGCTAAGGATTTGCTTCGGTTTTGTTCTCAGTCTAGCCAGCTCTACATGATATTGGAGAGGGAGAAAATTAAGTGCAAATTCACAGATCTGGCTTCGCATTTTGAACAAGCTATAAACGAGATTTCGTATGACAAAATTGATATTTCTGAGGAGTTAAAGGAGCAGATCGCACTTGTGGCTTCCCAGTTTCGAAGGGCCAAAGAACATTTTGTTCCACCTGGTCTGGAGCTTTATGAGCACCTGTTGTCTATCTATAATCAGAGCTGTGATGTGACTGCTGAATCTGATGCACTACGTTTAATATGTGAAAAACTACAATTTGTGAGTGCTGAAGATATCGAAAAAGAGTCACTTGCTCTTCATAAGGTGATTGTTGATGGGGGTGGTTATTATGAGAAAAGCTTGCAGGGATTGTCAGCGGTGCTGAGAAAAATTGATGATTTTTTGTTCAAGGATTCTGAAAATAAGGGAGATGATTGTGTTGAGAAACGCCCACAGGTGTTGTCAAGTGGGGATTTGCCTCCTCAAACTAGTGAGCTATGTGCGAACTTATGTTGTCAGTCACCGGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTCATCATTTCGACAGGGCAGACATATGAACGAACTTGCATTAGGAAATGGCTTGATACAGGGCATCAAACATGTCCCATCACTCGGCAGATTGTTTCGAGCCCCATTCTCATACCTAATCATGTTTTATACAACCTGATATCAAATTGGTGCGAGGCAAATGGAGTTGAACCACCTAAAAGATTAGAAAGTTTACGGCTCTACAAGCAAACATCAGATGGCTCCTCTGAATTAATAGACCTTGATTCCTTAATGAGGAAACTAATTTCCAGATACATTGAGGATCAGCGATGTGCAGCAGGAGAGCTCCGTCTTCTTGCCAAACACAACAGTGAAAATCGAAAGTTGATTGCTGAAGCTGGTGCTATACCCCTCCTCACTGATCTCCTATTTACTCCTGATGCTGGAACCCAGGAGCATGCAGTTACTGCTCTTCTCAATCTATCTATCTACGAGGGGAACAAAGAGCGCATCATGGCTTCTGATGCTGTGCCGGGATTCCTTTACGTGCTAAAAAATGGTAGCATGGAAGCTCGGGAAAATGCAGCGGCCACCTTTTTCAACCTCTCTTCAGTAGATGAGAACAAAATGATAATCGGTGCATCTGGAGCAATCCAGGCTCTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGGCTGATGCTGCGTCAGCTTTATTCAAACTGTGTATATACCAAGGGAACAAAGGACGTGCTGTAAAGGCTGGTATTGTACCCAAATTGATCGAAATGTTAACAGAACCAGGTGGGGAGATGAGGGGTGAGGCATTGGCAATACTAGCTGTAATAGCTAGCCACCCGGACGGAAAAGCAGCAATTGGATCTATGAATGCTATTCCCATTCTGGCTGAATTAATCATTAATGGATCTTACAGGAACAAAGAGAATGCGACCTCGGTGCTTGTATACATCTGTAAAGGAGATCCACTGTACCTACCGATTGTCGCTTCACATGAAGTGATCAATCCTCTCATGGAACTGGCCGCAAATGGCTCAGAAAGGGGCAAGCGGAAAGCCGAACAGCTTCTTGAGCTGTTAGGCAATTAG | 1908 | 0.4397 | MAKTKGFNVLHNLIHIATEISQISTFPSLIKTQCFDLSRRITFLIPLFQHLVNDVVLVPYEALVSLQEAFLSAKDLLRFCSQSSQLYMILEREKIKCKFTDLASHFEQAINEISYDKIDISEELKEQIALVASQFRRAKEHFVPPGLELYEHLLSIYNQSCDVTAESDALRLICEKLQFVSAEDIEKESLALHKVIVDGGGYYEKSLQGLSAVLRKIDDFLFKDSENKGDDCVEKRPQVLSSGDLPPQTSELCANLCCQSPVVPEEFRCPISLELMKDPVIISTGQTYERTCIRKWLDTGHQTCPITRQIVSSPILIPNHVLYNLISNWCEANGVEPPKRLESLRLYKQTSDGSSELIDLDSLMRKLISRYIEDQRCAAGELRLLAKHNSENRKLIAEAGAIPLLTDLLFTPDAGTQEHAVTALLNLSIYEGNKERIMASDAVPGFLYVLKNGSMEARENAAATFFNLSSVDENKMIIGASGAIQALVTLFCEGSQRGKADAASALFKLCIYQGNKGRAVKAGIVPKLIEMLTEPGGEMRGEALAILAVIASHPDGKAAIGSMNAIPILAELIINGSYRNKENATSVLVYICKGDPLYLPIVASHEVINPLMELAANGSERGKRKAEQLLELLGN | 635 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi884g00006 | 635 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 263 | 336 | IPR013083 | - | |
| Vivi884g00006 | 635 | ProSiteProfiles | U-box domain profile. | 262 | 336 | IPR003613 | GO:0004842|GO:0016567 | |
| Vivi884g00006 | 635 | PANTHER | U BOX DOMAIN-CONTAINING | 31 | 633 | - | - | |
| Vivi884g00006 | 635 | CDD | MLKL_NTD | 31 | 136 | - | - | |
| Vivi884g00006 | 635 | CDD | RING-Ubox_PUB | 264 | 316 | IPR045210 | - | |
| Vivi884g00006 | 635 | SUPERFAMILY | ARM repeat | 360 | 631 | IPR016024 | - | |
| Vivi884g00006 | 635 | Gene3D | - | 340 | 635 | IPR011989 | - | |
| Vivi884g00006 | 635 | SMART | Ubox_2 | 266 | 329 | IPR003613 | GO:0004842|GO:0016567 | |
| Vivi884g00006 | 635 | FunFam | RING-type E3 ubiquitin transferase | 345 | 635 | - | - | |
| Vivi884g00006 | 635 | SMART | arm_5 | 389 | 429 | IPR000225 | GO:0005515 |
Showing 1 to 10 of 20 entries
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi884g00006 | - | - | tpra:123888033 | 920.998 |
Showing 1 to 1 of 1 entries