Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi880g00012 ATGACTCATTTACCCTCGAAAAACCTATGGATTCGGAAGCAACAATGTCCTTGTGGAGATTGGAAGTGTTACATTACACAAGAGGGTGTTACTAAAGAGGATTCCACAACACCAGAATCAGTGAAACCTGATAAAACATCTTCTTGTATAGCTATCATTACCCCTTATGTTGGAATGGTGTTTAGGACTGATGATGAAGCTTTTGAATATTACGGTAATTTCGCTAGGAAGAATGGGTTCTCTATTAGAAAAGAAAGATCTAGAATTAGCCCGCAGTTAGGTGTTTACAAGCGCGACTTTGTTTGTTATCGATCCGGGTTTGCACCGGTGAAGAAGAAGGCGAACGGTGAGCATCATAGAGATAGGAAATCGGTGAGGTGCGGATGTGATGCGAAAATGTATCTGTCTAAGGAGGTTATGGATGGTGGTGTTTGCCAATGGGTTGTTGTGCAGTTTAGTAATGTACATAATCATGAGCTTTTGGAAGATGATCAGGTGCGGCTTTTACCTGCGTATCGGAAGATTCACGAGGATGATCAAGAGCGGATATTGTTGCTTTCGAAAGCTGGGTTTCCGATACATCGGATAGTGAAGATGCTTGAGCTGGAAAAAGGGATTCAAGGTGGGCATTTGCCGTTCTTGGAAAGGGATGTGAGGAACTTTGTCCAGAATCGCAAGAAGGTTGTTCAAGAGAACGAGGCGATGTTAAGTGAGAAACGAGAAAATGATGTTTTGGAGCTTCTTGAGGTGTGTAAAGCTGTGAAAGAAGGTGATGTTGAGTTTGTTTATGATTTTACTGTCGATAAGAATGAGAAAGTTGAAAATATAGCTTGGTCGTATGGTGATTCTGTTAATGCGAATGCTTTGTTTGGTGATGTGATTTATTTTGACATTTCTTATCGATCCGTTGCTTATGGATTGCATTTTGGAGTGTGGTTTGGTATTGATAATTGTGGTAGAATAATTTTGTTCGGTTGTGTTTTACTCCAAGACGAAACACCGCAATCGTTCTCATGGGCTTTACAGACTTTTCTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTATATCTGATCTTGACCCTAGTCTTGGGGATGCAATTAGAAGCGAATTTCAAGGAACTAAACATGTCATACCACTATGGAATATTTTGAATAAGGTACATAGTTGGTTTTCTATTCCTCTTGGATCTCGCATTGTAGAGTTTCAATCAGAGTTCAATGCGTTATTTCAAATTGAGAATACAGAAGAATTTGAACTTCAATGGAGCCAAATGATTTCTATGTTTGAACTTGGTTCAGATAAACATATCGATTTACTGTATTCGGTTCGAGCTTCCTGGGCACAATCATATGTAAGAGGTTATTTCTTAGCTCAAATGGCGACAACAGCTTATTCCAAGTCTATAGATGCATTTTTTGAAGGGATCTTCACTGAACATACATGTTTGCGTAGCTTTTTTGAACAGGTTGGTATTTCTGCAAATTTCCGGCATCAATCACATGACGAAACTCAATATACTAATCTCAGAACCTACATACCAATAGAAGAGCATGCGCGGAGCATCCTCACACCCTATGCTTTCAATTCTTTGCAACAAGAGTTATTGTTGGCAATGCAATACTCTACATCTGAAATGGCCAATGGATCGTATATTATACGACACTTCAAAAGGTTGGATGGAGATCGGTTCGTGATATGGTTGGCGGAAGAAGAACAGATACACTGCTCTTGCAAAGAGTTTGAATCGTCAGGGATATTATGCAGACATGCTCTTCATGTACTTGTAATAAAGAATTACTTTCATCTTCCTGACAAATACTATTTAAGTAGATGGCGTAGGGAATGTTCTTTACCCGTCGAGGATGAGCATAACAACAACCAAAGTATTATTGGTAGGGAATGGTTTCAAGAATATCAATCTCTAGTTGAAACTTTGTTGTCGGAGTCATCCATTACAAAGGAGCGATCTGACTATGTTCGCAAAGAACTGACAAAAGAACTTAATAGGATTCTTAATGAGGTTAGAAATCTTCCTGAGACTGACAATGTTTGCAGCATGAACGTGCCGGTTTCACCAAATGGCCAAGTTTGA 2097 0.3944 MTHLPSKNLWIRKQQCPCGDWKCYITQEGVTKEDSTTPESVKPDKTSSCIAIITPYVGMVFRTDDEAFEYYGNFARKNGFSIRKERSRISPQLGVYKRDFVCYRSGFAPVKKKANGEHHRDRKSVRCGCDAKMYLSKEVMDGGVCQWVVVQFSNVHNHELLEDDQVRLLPAYRKIHEDDQERILLLSKAGFPIHRIVKMLELEKGIQGGHLPFLERDVRNFVQNRKKVVQENEAMLSEKRENDVLELLEVCKAVKEGDVEFVYDFTVDKNEKVENIAWSYGDSVNANALFGDVIYFDISYRSVAYGLHFGVWFGIDNCGRIILFGCVLLQDETPQSFSWALQTFLRFMRGRCPQTIISDLDPSLGDAIRSEFQGTKHVIPLWNILNKVHSWFSIPLGSRIVEFQSEFNALFQIENTEEFELQWSQMISMFELGSDKHIDLLYSVRASWAQSYVRGYFLAQMATTAYSKSIDAFFEGIFTEHTCLRSFFEQVGISANFRHQSHDETQYTNLRTYIPIEEHARSILTPYAFNSLQQELLLAMQYSTSEMANGSYIIRHFKRLDGDRFVIWLAEEEQIHCSCKEFESSGILCRHALHVLVIKNYFHLPDKYYLSRWRRECSLPVEDEHNNNQSIIGREWFQEYQSLVETLLSESSITKERSDYVRKELTKELNRILNEVRNLPETDNVCSMNVPVSPNGQV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi880g00012 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 668 IPR031052 GO:0006355
Vivi880g00012 698 Pfam FAR1 DNA-binding domain 69 161 IPR004330 -
Vivi880g00012 698 Pfam SWIM zinc finger 566 595 IPR007527 GO:0008270
Vivi880g00012 698 ProSiteProfiles Zinc finger SWIM-type profile. 565 600 IPR007527 GO:0008270
Vivi880g00012 698 Pfam MULE transposase domain 293 386 IPR018289 -
Vivi880g00012 698 SMART 26again6 575 602 IPR006564 GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi880g00012 MULE 8.5e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi880g00012 - - gmx:100817107 1169.45