Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi880g00002 ATGGGGAATGTGAATGGCAGAGAAGAAGATTTCAACGGCACACTCTCGGAAGCTTCATCTGATGATGGCGAAAGAGAGGGAGGTTTTGACAGTGTCAGTGATTCCATGTCTGTGCCTGATGGGGTCGTTGAAAATCCTTTACCTTCTGAGGAAATGGGTCATTCTCCTCCTGCTAGCCCTAGAACTACTCAATCTCCGTTAATGTTCTCTCCTCAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAGGCTCCGACCCCTTCCTGGATGCAAACTACTTCAGGGTACGAGGATATGTTTGATGAAATTGGGATTCCGACAATGATTACTTGGAGTTATGGTGGTAAAGAAGTTTCTGTGGAGGGATCATGGGATAATTGGAAATCAAGAATTCCCTTGCAGAGATCAGGAAAGGACTTCACTATAATGAAGGTGCTGCCATCTGGTGTGTACCAGTTTAGATTTATCGTGGATGGACGATGGAGGCACGCACCTGACTTGCCATGGGAACAAGATGACGCTGCCAATACCTACAACATTCTTGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCACCTAAATCACCAGATTCTAGTTACAACAACTTACACCTAAGCTCCGAAGATTATGCAAAGGAGCCGCCACTGGTTCCTCCATTCATGCAAATGACTCTTCTAAATGTTCCTTCAACGAATATGGAGTTCGAACCTCTTGTGTCCAGACCACAGCACGTAATGCTCAATCATCTCTATATGCAGAAAGGAAAGAATAGCCCTTCAGTGGTTGCGCTCGGAACAACTCATCGGTTTGTAGCGAAATACGTCACGGTGGTGCTGTACAAGTCTTTGCAGCGGTAA 885 0.4531 MGNVNGREEDFNGTLSEASSDDGEREGGFDSVSDSMSVPDGVVENPLPSEEMGHSPPASPRTTQSPLMFSPQVPVVPLQRPDEMQAPTPSWMQTTSGYEDMFDEIGIPTMITWSYGGKEVSVEGSWDNWKSRIPLQRSGKDFTIMKVLPSGVYQFRFIVDGRWRHAPDLPWEQDDAANTYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLNVPSTNMEFEPLVSRPQHVMLNHLYMQKGKNSPSVVALGTTHRFVAKYVTVVLYKSLQR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi880g00002 294 SUPERFAMILY AMPKBI-like 189 291 IPR037256 -
Vivi880g00002 294 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 220 290 IPR006828 GO:0005515
Vivi880g00002 294 CDD E_set_AMPKbeta_like_N 108 184 - -
Vivi880g00002 294 SMART AMPKBI_2 202 292 IPR006828 GO:0005515
Vivi880g00002 294 Gene3D - 195 292 - -
Vivi880g00002 294 Gene3D Immunoglobulins 102 189 IPR013783 -
Vivi880g00002 294 SUPERFAMILY E set domains 107 192 IPR014756 -
Vivi880g00002 294 MobiDBLite consensus disorder prediction 1 67 - -
Vivi880g00002 294 Pfam Glycogen recognition site of AMP-activated protein kinase 107 186 IPR032640 -
Vivi880g00002 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 294 IPR043554 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi880g00002 117 187 Protein tyrosine phosphatase (PTP) family AT3G01510 36.986 5.79e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi880g00002 K07199 - gmx:100777497 493.426