LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi877g00002	ATGGATATTAAGAATCAACATTTGAGAGATTTGGTTGATAGAATGAGAATTAATTGCAAGGAATTAGAAGAGCGGATTTTACGACTAAAGCATAAACACTATAAACACAAGAACAATGATGAACCTTCCGAAGAGAGAAAAAATATGGTTGAGTTGATGGAGTGTGATAGAAAGACTCAGAAGATTGGCAACAATGGAGTTATACAAGAGAGAATAAATATGGATGATAATGAAATTTCACAAGGTAAGACAACAATTCCAGGGTGGATCTCAAACAAAGTTCCAAGGTTGAATTCAGATCAAGCATCAGAATCAATGATCAAGAAAGCTCGTGTATCAGTTAGGGCAAGATCAGAAGCTTCTATGATTTCAGATGGATGTCAATGGAGAAAGTATGGACAGAAGATGGCAAAGGGGAATCCACATCCAAGAGCATATTATCGCTGCACCATGGGAACTACATGTCCAGTTCGGAAGCAAGTACAAAGGTGTGCTAACGATAAAAGGGTGTTAGTTACAACATATGAAGGACAACATAATCATCCTCTTCCACCAACAGCTAAAACAATGGCATCAACAACGACATCAGTGGCATCAATGCTTCTCTCAGGACCAATGTTCGAAAGTACATTATTCCCTTATTCACAATACATAACACTCTCAGCTTCTGCTCCATTTCCAACTATAACATTAGATCTCACTCAAAATCCTACCAACAATTCATCACAGGGTCAATTTAACCTCTTTCAACCTATTTTGACTCAAAAATTTATGTCAACTGCAAATATGTTGGGAATGGAAAATGTTTCATTTCCTGACAGAGTTTGTGCAACAACAACTGCTATGACTTCTGATCCAAAATTCCCAGGTGCTCTTGTGGCTGCAATAACTTCCATTATTGAAAGTAATTCAAATTGCGACAATAGTGGCATTGCCAATGGTATAAGGTAA	951	0.3733	MDIKNQHLRDLVDRMRINCKELEERILRLKHKHYKHKNNDEPSEERKNMVELMECDRKTQKIGNNGVIQERINMDDNEISQGKTTIPGWISNKVPRLNSDQASESMIKKARVSVRARSEASMISDGCQWRKYGQKMAKGNPHPRAYYRCTMGTTCPVRKQVQRCANDKRVLVTTYEGQHNHPLPPTAKTMASTTTSVASMLLSGPMFESTLFPYSQYITLSASAPFPTITLDLTQNPTNNSSQGQFNLFQPILTQKFMSTANMLGMENVSFPDRVCATTTAMTSDPKFPGALVAAITSIIESNSNCDNSGIANGIR	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi877g00002	316	SMART	WRKY_cls	123	183	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi877g00002	316	Pfam	WRKY DNA -binding domain	125	182	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi877g00002	316	FunFam	probable WRKY transcription factor 31	108	185	-	-
	Vivi877g00002	316	SUPERFAMILY	WRKY DNA-binding domain	116	184	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi877g00002	316	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	4	304	IPR044810	GO:0003700
	Vivi877g00002	316	Coils	Coil	5	39	-	-
	Vivi877g00002	316	Gene3D	WRKY domain	108	185	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi877g00002	316	ProSiteProfiles	WRKY domain profile.	118	184	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi877g00002	102	300	WRKY Transcription Factor Family	AT4G04450	52.991	1.86e-66	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi877g00002		WRKY	3.1e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi877g00002	-		-	vvo:131637382	624.78