LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi873g00010	ATGGACAAAAAAGAGTGCAGTTCTTCACAAGATCCTGATGTTCGAAAGGGACCTTGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTGGCAAAATCTGCTGGTCTTAAACGTACCGGAAAGAGTTGCAGACTTCGGTGGCTAAATTATCTTCGACCCGATGTTAGACGAGGGAATATTACACCCGAGGAACAACTCTTGATCATAGAACTACATGCAAAATGGGGAAACAGGTGGTCGAAAATCGCGAAACATCTACCGGGACGAACCGATAACGAGATAAAGAACTATTGGAGGACAAGGATTCAGAAGCATATCAAACAAGCTGATCAACAAAACTCTCAGCAACAACAACAGAGTTCTTCTGATGTTCAAATAAATGACAATAATGAAAATAATAACAATCAAGTAGCAAGCTCTAGCCAAATTCCCAACACAGCTGAACCTATGGACACCAGCAGCAATAATATTATGTCACCTCCTTCTTACCAAGGAATTTTGGAACCATTTTCATCTCATCAGTTTCCTACAATCTCAGATCAATCAAGTTCTTGCACCAATGACAATAACTACTGGAGCATGGAAGATCTCTTGTCTTTGCAATTACTTAATGGAGATTAA	657	0.3973	MDKKECSSSQDPDVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQADQQNSQQQQQSSSDVQINDNNENNNNQVASSSQIPNTAEPMDTSSNNIMSPPSYQGILEPFSSHQFPTISDQSSSCTNDNNYWSMEDLLSLQLLNGD	218

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi873g00010	218	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Vivi873g00010	218	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Vivi873g00010	218	Pfam	Myb-like DNA-binding domain	69	112	IPR001005	-
	Vivi873g00010	218	SMART	sant	68	116	IPR001005	-
	Vivi873g00010	218	SMART	sant	15	65	IPR001005	-
	Vivi873g00010	218	Gene3D	-	73	150	-	-
	Vivi873g00010	218	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
	Vivi873g00010	218	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Vivi873g00010	218	Gene3D	-	16	68	-	-
	Vivi873g00010	218	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	11	180	IPR044676	GO:0003700\|GO:0006355\|GO:0043565

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi873g00010	10	218	MYB Transcription Factor Family	AT3G01530	54.245	1.25e-75	225

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi873g00010		Myb_DNA-binding	6.6e-15	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi873g00010	K09422		-	gmx:778046	321.242

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