Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi872g00001 ATGTCCTCTTCATCATCAACTTCCTTTTCACCGGACCAGCAACAACAGCAGCAGCAACAACTCTCTCCTTCCGACCAGCTCTGTTATGTTCATTGCAATTTCTGTGACACTGTTCTCGCGGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACAGTGAGATGTGGCCATTGCACCAACCTTCTCTCGGTTAACATGCGCGCTTTGCTCCTCCCTGCTGCTAATCAGTTTCATCTCGGACACAACTTTTTCAACCCTCAAAATCTTATGGAGGAGATTCGAAATGCACCTTCAACAAACATGATGATGAATCAGCTTCCAAGTCAAAATGATTTGATGATGAACACAATGATGAGAGGAGGACATCATGAAGAAATCCCTAAACCTCCACCTGCGAACCGACCTCCGGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATTAAGGATGAGATTCAACGTATCAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCAAAAAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGACTCAGAGGACGTGATTATGAAAGATGGGTTTTTCACACAAGCAAATGTAGGTGTCTCTCCCTACTAG 675 0.4489 MSSSSSTSFSPDQQQQQQQQLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAANQFHLGHNFFNPQNLMEEIRNAPSTNMMMNQLPSQNDLMMNTMMRGGHHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDVIMKDGFFTQANVGVSPY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi872g00001 224 MobiDBLite consensus disorder prediction 122 136 - -
Vivi872g00001 224 PANTHER PROTEIN YABBY 6-RELATED 3 200 IPR006780 GO:0007275
Vivi872g00001 224 MobiDBLite consensus disorder prediction 122 143 - -
Vivi872g00001 224 CDD HMG-box_SF 142 178 - -
Vivi872g00001 224 FunFam Axial regulator YABBY 133 205 - -
Vivi872g00001 224 SUPERFAMILY HMG-box 133 182 IPR036910 -
Vivi872g00001 224 Gene3D High mobility group box domain 128 184 IPR036910 -
Vivi872g00001 224 Pfam YABBY protein 23 188 IPR006780 GO:0007275
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi872g00001 34 222 C2C2-YABBY Transcription Factor Family AT4G00180 63.033 1.36e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi872g00001 YABBY 1.9e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi872g00001 K25796 - gmx:100781267 369.777