Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi871g00042 ATGAAAGAAGGTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATACTGCGACGGTTGCAACTGTGTTAACTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCAAAAATTGCGAGCAGCCCTCAGGGAGCACGCGATAGCAGGGTGGAGGCTGGAGAAGGTGTAATATTAGTAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGCTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAGAACTGTAAATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTGTCATGGAGATCATAATAACAACACGTATATTCAGCAAGCGGCAAATGCTGCTATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAACGAAAAGGCCAGGAACTCTTCTTATGGCCTGCAAACAAGGATCCATCAATTGGCAAGCCGGGACAACAGGTAAACCATGTCAAAAACTCAGCACCCTCATCATCATTATCACCCGTCTCAAGTGGTCGTGTTGCTAATGCAACATTAGGTCAGAGTCCATCAAAATTAAAGTACAGGTCTCTTTTAGCAGACATCGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCAAAAACACTTGCAGACCAGAAAATTTTAGTGGAAAAGCGTACAGAAGATGAGACACAAACATGCCTTGCTTCTTCAACTCAAGAGCAATTACCAAGTCAAAAAGAAGTTGATGTTGAGAAAGCTGTGGAAGATGATTGTTCGAGTGCAAATCAAACAGATAAAATCAGCCCAGGTAATTCCTGTTCAGATGGCGCTGACGTCTCAAAAGGGAGACCAATGTCTCCCGGGACTTTAGCCTTGATGTGCGACGAGCAAGATACAATGTTCATGACAACCGCCTCCCCCATTGGGGCAACGACCCAAGCTTGCAACACATCTTCACAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCTGAACAAGAAAGAGTTGTATTAACACAATTTAGAGATTTTCTCAATAGAGTTATCACTATGGGGGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGAATCAGAGGGTCAAAAGGATCCAATCAACAGTGGAATTGGAAACACCAGTACTGAGACAGTACATCAACAAGAAGCCACTAGCAATGGTGATGCCAAACCTGTAGTTCCACCTATGGCCACAACTTCAACACCTGTGGTCCCTGGTGATGCTGCAGCTGAAAATGGTGAAACTAAGCTGAATATGGAAAAAGATGTATGA 1446 0.4288 MKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSRVEAGEGVILVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALCHGDHNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPANKDPSIGKPGQQVNHVKNSAPSSSLSPVSSGRVANATLGQSPSKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKILVEKRTEDETQTCLASSTQEQLPSQKEVDVEKAVEDDCSSANQTDKISPGNSCSDGADVSKGRPMSPGTLALMCDEQDTMFMTTASPIGATTQACNTSSQFPSGQGVTEVYAEQERVVLTQFRDFLNRVITMGEINETKCSSLARSESEGQKDPINSGIGNTSTETVHQQEATSNGDAKPVVPPMATTSTPVVPGDAAAENGETKLNMEKDV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi871g00042 481 Coils Coil 474 481 - -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 193 221 - -
Vivi871g00042 481 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 95 129 IPR005172 -
Vivi871g00042 481 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 9 44 IPR005172 -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 309 324 - -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 190 221 - -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 412 445 - -
Vivi871g00042 481 SMART CXC_2 92 133 IPR033467 -
Vivi871g00042 481 SMART CXC_2 7 47 IPR033467 -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 412 481 - -
Vivi871g00042 481 PANTHER TESMIN/TSO1-RELATED 3 404 IPR028307 -
Vivi871g00042 481 ProSiteProfiles CRC domain profile. 8 132 IPR005172 -
Vivi871g00042 481 MobiDBLite consensus disorder prediction 309 333 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi871g00042 2 414 CPP Transcription Factor Family AT4G29000 63.070 4.12e-179 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi871g00042 TCR 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi871g00042 - - gmx:100777698 773.852