Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi871g00016 ATGGATCCTCCAGCAAAGAGTTGGAGCATCCATACCCGACCCGAAATAACATCCCAATACGAAATCCTCGAACACATCGGATCCGGATCCTACGCCGACGTCTACCGTGGCCGGCGAATCTCCGACGGGAGAATCATAGCCCTTAAAGAAGTTCACGATCACCAATCAGCGTCGAGAGAAATCGACGCTTTGCGGATTCTTCGGGGCTCCGAAAACGTTGTCTTCATGCATGAGTTCTTCTGGCGAGAAGATGAAGATGCTGTGATCGTTCTCGAGTTTCTGAAGACCGATCTCGCTACTGTGATTAAGGAGGCTGGTAGTGAGGGTCTTGCTGTTGGAGAGGTTAAAGGGTGGATGGTGCAGATTCTTAGTGGGGTTCATGCTTGTCATCGGAATATGATCGTGCATAGAGACTTGAAGCCGGAGAATTTTTTGGTTTCGGATGATGGGGTTCTCAAATTGGCAGATTTTGGACAGGCAAGGATACTTTTGGAGTCTGGATTTGATGCATCAAATAGTGAAAGTTCATCCCAATATGCTCTTGATGCTATTCCCTTATCAGAAAATTCAAACCGGACTGGATTTGAAAATCAAGAGGAGGAGGAAAGAATCAGTCATGAGGAATATTTTAGAGTATTAGATGAGCTGAAAATTAAGAGTCATACATATGATACTGATGATAAGGACACAAACACGCACGACGGTAACAACTCGTGCCTTGCAACATGCACGATTAGCAATGACGACGATGACGATGATGTATGGAAGAATTCTTTGCCATATGAAGCAGATGAAGAAGGAGGGTATGAAGAGCTTGGTTTTCTCACATCATGTGTTGGAACAAGATGGTTTAAAGCTCCGGAACTGCTTTATGGATCGACTAATTATGGTTTGGAGGTTGATCTCTGGTCATTAGGATGTGTTTTTGCTGAGTTGTTTACCTTGAAGCCTTTGTTTCCTGGAACAGGTGATATAGATCAGATTAGTAGAATCATTAGTGTTTTGGGTAATCTCAATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAAGAATTTCTTTTACTAAGGTGGAAAATCCTATTGGTATTGAAGCATGCATGCCGAATCGTCTGCATGATGAAGTTTCCTTGGTGAAAAAATTGATTTGTTATGATCCAGCTAGGAGAGCCACTGCGGCGGAGTTACTTCATGACAAGTACTTCTCTCAGTTGTGA 1224 0.4322 MDPPAKSWSIHTRPEITSQYEILEHIGSGSYADVYRGRRISDGRIIALKEVHDHQSASREIDALRILRGSENVVFMHEFFWREDEDAVIVLEFLKTDLATVIKEAGSEGLAVGEVKGWMVQILSGVHACHRNMIVHRDLKPENFLVSDDGVLKLADFGQARILLESGFDASNSESSSQYALDAIPLSENSNRTGFENQEEEERISHEEYFRVLDELKIKSHTYDTDDKDTNTHDGNNSCLATCTISNDDDDDDVWKNSLPYEADEEGGYEELGFLTSCVGTRWFKAPELLYGSTNYGLEVDLWSLGCVFAELFTLKPLFPGTGDIDQISRIISVLGNLNEEAWNGCSKLPDYGRISFTKVENPIGIEACMPNRLHDEVSLVKKLICYDPARRATAAELLHDKYFSQL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi871g00016 407 SMART serkin_6 20 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi871g00016 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vivi871g00016 407 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vivi871g00016 407 Gene3D Transferase(Phosphotransferase) domain 1 10 185 - -
Vivi871g00016 407 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vivi871g00016 407 Pfam Protein kinase domain 275 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi871g00016 407 Pfam Protein kinase domain 20 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi871g00016 407 ProSiteProfiles Protein kinase domain profile. 20 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi871g00016 407 Gene3D Transferase(Phosphotransferase) domain 1 270 406 - -
Vivi871g00016 407 SUPERFAMILY Protein kinase-like (PK-like) 12 406 IPR011009 -
Vivi871g00016 407 PANTHER CELL DIVISION PROTEIN KINASE 19 404 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi871g00016 4 406 Core Cell Cycle Gene Families AT4G28980 62.708 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vivi871g00016 Pkinase 1e-32 CL0016