Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi866g00011 ATGTGCAGCGGTATGGGGAATGAGAATGAGAATAAAGAAGGTCGGCGTCAGGATGTTTATTCTTTGCTTGAATTTTCAGCGGCAGATGATGTGATTGGTTTCAAAGACGCGGTCGAAAACGAAGGTTGTGATGTCGATGAGGTTGGTTTGTGGTATGGGAGAAGGGTTGGTTCGAATAAATTGGGTTATGTAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGCTTGAATGTTTCGGCGTATATTCTTGGAACGGGTCGCGTTGATGTTAATCGGGGTAGTGGATCGGACGGTGCTACTGCTCTTCATTGTGCTGTTGTTGGGGGTTCTGCTGCTTCTGCTGAGATTGTGAAGCTTTTGCTTGATGCGTCGGCGGATGCTGGTGCTGTTGATGCGAACGGTAAACGGCCTGTTGACTTGGTTGTCTCGGTGGGGAATTCTATGTTTGATCTGAGGAAGAGGATGTTGCAAGCTCTTCTGGAGGGTACGGGCGGGGCTGATCAAACATGTGTTATATTTCCGGAGACAATTGACGGTGTTGATGAATATCAAAGGCAAGATTTAAACTCGCCTCGTTTTTCAAAAGATTATCCTCTTGATCTTTCTCTACCTGACATAAAGAACGGAATATATAGTACCGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGTTCTAGGGCGTATTCTCATGATTGGACCGAGTGTCCATTTGTTCATCCGGGGGAAAACGCAAGGCGACGTGATCCAAAGAAATATCTTTATAGCTGTGTCCCTTGTCCCGAGTTTCGCAAAGGATCGTGCAGCAAAGGGGATTCATGTGATTATGCACATGGTATTTTCGAGTGCTGGCTTCATCCTGCGCAGTATCGGACACGTCTTTGCAAGGATGAGAGCGCGTGCACAAGAAGAGTTTGCTTCTTTGCTCACAGGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATCCCGTCTCCGAGGTCATATTACAGTAGTGCTTCCGCATTAGAGATGGGTTCACTTAGTCCTACTGCGCTGAGTTCTCCGTCTGGTTTGATGCCGCCATCGTCAACACCGCCTTTGACTCCATCTGGAGCTTCTTCTCCTGTTAATGCGGCAGCCATGTGGCAGGCACAGTCTAATGTTTCGGTCCCTACCCTTCAGCTTCCTCGAAGTAGGTTGAATTCGGCAAGAACTGCTAGAAACATTGATTCAGATATCGCAATGATTAGGGCTGAAACTCAGCGGCGAAGCCAGCAACTAATGATGGACGAGATATCCGGTCTTTCCTCACCTTCCAACTGGAAAAATTCCATTCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGCAGTCAAACTACCGGCGAACTAAATCGGTTTTCGGGCGTGAAGCCTAATAACCTTGAAGACATTTTCGGATCACTTGATCCATCAATGTTTCATAAATTCCACGGAATGTCACTCGATGCTGCAGGAACTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCGAATATGAATCAGCAAAACTACACTTCGGGCCATTCTACTTCCAGTGTGATCGGATCGCCAACTAGATTTGATCTATCCGGGGAGTTATCTGCAGCAGCTTTAAATTCAAGAGCTGCCGCCTTTTCCAAGCGGAGCCAGAGCTTTATCGAGCGCAGCGTGGCGAACCGTCCTTCCGAGCTTCTTTCTCCTGTCAATCCTTACGCCTTCTCCAACTGGGGATCACCCGATGGAAAACTGGATTGGACCATACACGGAGAGGAACTTAACAAGCTGAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAACTACACAGGAAAATAACAACGAACCAGACGTCTCTTGGGTTAATTCACTTGTGAAGGATGCTACGCCGCAGGAATCTAGCCGATTTAGCGATGAAAATCAGAAACGGAAACTGCAATACAATCTTAACAACGGAACAGACACGATTCCGGCTTGGTTGGAGCAATTGTACAAGGATCAAGAACAAGCTGTGCATTGA 2049 0.4675 MCSGMGNENENKEGRRQDVYSLLEFSAADDVIGFKDAVENEGCDVDEVGLWYGRRVGSNKLGYVERTPLMVAAMFGSLNVSAYILGTGRVDVNRGSGSDGATALHCAVVGGSAASAEIVKLLLDASADAGAVDANGKRPVDLVVSVGNSMFDLRKRMLQALLEGTGGADQTCVIFPETIDGVDEYQRQDLNSPRFSKDYPLDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYLYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHRVEELRPLYASTGSAIPSPRSYYSSASALEMGSLSPTALSSPSGLMPPSSTPPLTPSGASSPVNAAAMWQAQSNVSVPTLQLPRSRLNSARTARNIDSDIAMIRAETQRRSQQLMMDEISGLSSPSNWKNSIPNSPSFPVSLSSQTTGELNRFSGVKPNNLEDIFGSLDPSMFHKFHGMSLDAAGTQLQSPTGIQMRPNMNQQNYTSGHSTSSVIGSPTRFDLSGELSAAALNSRAAAFSKRSQSFIERSVANRPSELLSPVNPYAFSNWGSPDGKLDWTIHGEELNKLRKSSSFGFRSSNTPLTTQENNNEPDVSWVNSLVKDATPQESSRFSDENQKRKLQYNLNNGTDTIPAWLEQLYKDQEQAVH 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi866g00011 682 ProSiteProfiles Ankyrin repeat profile. 99 134 IPR002110 GO:0005515
Vivi866g00011 682 Pfam Ankyrin repeats (3 copies) 59 130 IPR002110 GO:0005515
Vivi866g00011 682 MobiDBLite consensus disorder prediction 605 627 - -
Vivi866g00011 682 FunFam Zinc finger CCCH domain-containing protein 66 215 283 - -
Vivi866g00011 682 Gene3D - 257 320 - -
Vivi866g00011 682 MobiDBLite consensus disorder prediction 350 375 - -
Vivi866g00011 682 SUPERFAMILY Ankyrin repeat 52 148 IPR036770 -
Vivi866g00011 682 Gene3D - 11 163 IPR036770 -
Vivi866g00011 682 ProSiteProfiles Ankyrin repeat region circular profile. 99 133 - -
Vivi866g00011 682 PANTHER UNKEMPT FAMILY MEMBER 24 637 IPR045234 -
Vivi866g00011 682 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Vivi866g00011 682 SMART ANK_2a 99 131 IPR002110 GO:0005515
Vivi866g00011 682 SMART ANK_2a 64 94 IPR002110 GO:0005515
Vivi866g00011 682 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Vivi866g00011 682 SMART c3hfinal6 257 283 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi866g00011 21 677 C2H2 Transcription Factor Family AT5G12850 39.197 2.96e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi866g00011 Ank_2 5.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi866g00011 - - aprc:113846970 982.245