Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi866g00010 ATGGGGAATGAGAATGAGAATAAAGAAGGTCGGCGTCAGGATGTTTATTCTTTGCTTGAATTTTCAGCGGCAGATGATGTGATTGGTTTCAAAGACGCGGTCGAAAACGAAGGTTGTGATGTCGATGAGGTTGGTTTGTGGTATGGGAGAAGGGTTGGTTCGAATAAATTGGGTTATGTAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGCTTGAATGTTTCGGCGTATATTCTTGGAACGGGTCGCGTTGATGTTAATCGGGGTAGTGGATCGGACGGTGCTACTGCTCTTCATTGTGCTGTTGTTGGGGGTTCTGCTGCTTCTGCTGAGATTGTGAAGCTTTTGCTTGATGCGTCGGCGGATGCTGGTGCTGTTGATGCGAACGGTAAACGGCCTGTTGACTTGGTTGTCTCGGTGGGGAATTCTATGTTTGATCTGAGGAAGAGGATGTTGCAAGCTCTTCTGGAGGGTACGGGCGGGGCTGATCAAACATGTGTTATATTTCCGGAGACAATTGACGGTGTTGATGAATATCAAAGGCAAGATTTAAACTCGCCTCGTTTTTCAAAAGATTATCCTCTTGATCTTTCTCTACCTGACATAAAGAACGGAATATATAGTACCGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGTTCTAGGGCGTATTCTCATGATTGGACCGAGTGTCCATTTGTTCATCCGGGGGAAAACGCAAGGCGACGTGATCCAAAGAAATATCTTTATAGCTGTGTCCCTTGTCCCGAGTTTCGCAAAGGATCGTGCAGCAAAGGGGATTCATGTGATTATGCACATGGTATTTTCGAGTGCTGGCTTCATCCTGCGCAGTATCGGACACGTCTTTGCAAGGATGAGAGCGCGTGCACAAGAAGAGTTTGCTTCTTTGCTCACAGGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATCCCGTCTCCGAGGTCATATTACAGTAGTGCTTCCGCATTAGAGATGGGTTCACTTAGTCCTACTGCGCTGAGTTCTCCGTCTGGTTTGATGCCGCCATCGTCAACACCGCCTTTGACTCCATCTGGAGCTTCTTCTCCTGTTAATGCGGCAGCCATGTGGCAGGCACAGTCTAATGTTTCGGTCCCTACCCTTCAGCTTCCTCGAAGTAGGTTGAATTCGGCAAGAACTGCTAGAAACATTGATTCAGATATCGCAATGATTAGGGCTGAAACTCAGCGGCGAAGCCAGCAACTAATGATGGACGAGATATCCGGTCTTTCCTCACCTTCCAACTGGAAAAATTCCATTCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGCAGTCAAACTACCGGCGAACTAAATCGGTTTTCGGGCGTGAAGCCTAATAACCTTGAAGACATTTTCGGATCACTTGATCCATCAATGTTTCATAAATTCCACGGAATGTCACTCGATGCTGCAGGAACTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCGAATATGAATCAGCAAAACTACACTTCGGGCCATTCTACTTCCAGTGTGATCGGATCGCCAACTAGATTTGATCTATCCGGGGAGTTATCTGCAGCAGCTTTAAATTCAAGAGCTGCCGCCTTTTCCAAGCGGAGCCAGAGCTTTATCGAGCGCAGCGTGGCGAACCGTCCTTCCGAGCTTCTTTCTCCTGTCAATCCTTACGCCTTCTCCAACTGGGGATCACCCGATGGAAAACTGGATTGGACCATACACGGAGAGGAACTTAACAAGCTGAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAACTACACAGGAAAATAACAACGAACCAGACGTCTCTTGGGTTAATTCACTTGTGAAGGATGCTACGCCGCAGGAATCTAGCCGATTTAGCGATGAAAATCAGAAACGGAAACTGCAATACAATCTTAACAACGGAACAGACACGATTCCGGCTTGGTTGGAGCAATTGTACAAGGATCAAGAACAAGCTGTGCATTGA 2037 0.4669 MGNENENKEGRRQDVYSLLEFSAADDVIGFKDAVENEGCDVDEVGLWYGRRVGSNKLGYVERTPLMVAAMFGSLNVSAYILGTGRVDVNRGSGSDGATALHCAVVGGSAASAEIVKLLLDASADAGAVDANGKRPVDLVVSVGNSMFDLRKRMLQALLEGTGGADQTCVIFPETIDGVDEYQRQDLNSPRFSKDYPLDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYLYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHRVEELRPLYASTGSAIPSPRSYYSSASALEMGSLSPTALSSPSGLMPPSSTPPLTPSGASSPVNAAAMWQAQSNVSVPTLQLPRSRLNSARTARNIDSDIAMIRAETQRRSQQLMMDEISGLSSPSNWKNSIPNSPSFPVSLSSQTTGELNRFSGVKPNNLEDIFGSLDPSMFHKFHGMSLDAAGTQLQSPTGIQMRPNMNQQNYTSGHSTSSVIGSPTRFDLSGELSAAALNSRAAAFSKRSQSFIERSVANRPSELLSPVNPYAFSNWGSPDGKLDWTIHGEELNKLRKSSSFGFRSSNTPLTTQENNNEPDVSWVNSLVKDATPQESSRFSDENQKRKLQYNLNNGTDTIPAWLEQLYKDQEQAVH 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi866g00010 678 Gene3D - 7 159 IPR036770 -
Vivi866g00010 678 SUPERFAMILY Ankyrin repeat 48 144 IPR036770 -
Vivi866g00010 678 SMART c3hfinal6 253 279 IPR000571 GO:0046872
Vivi866g00010 678 SMART c3hfinal6 288 311 IPR000571 GO:0046872
Vivi866g00010 678 MobiDBLite consensus disorder prediction 601 623 - -
Vivi866g00010 678 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Vivi866g00010 678 SMART ANK_2a 95 127 IPR002110 GO:0005515
Vivi866g00010 678 SMART ANK_2a 60 90 IPR002110 GO:0005515
Vivi866g00010 678 MobiDBLite consensus disorder prediction 346 371 - -
Vivi866g00010 678 Gene3D - 253 316 - -
Vivi866g00010 678 PANTHER UNKEMPT FAMILY MEMBER 20 633 IPR045234 -
Vivi866g00010 678 ProSiteProfiles Zinc finger C3H1-type profile. 253 280 IPR000571 GO:0046872
Vivi866g00010 678 FunFam Zinc finger CCCH domain-containing protein 66 211 279 - -
Vivi866g00010 678 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Vivi866g00010 678 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi866g00010 17 673 C2H2 Transcription Factor Family AT5G12850 39.197 2.76e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi866g00010 Ank_2 5.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi866g00010 - - aprc:113846970 981.474