LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi863g00003	ATGGAACTTGGTTTAACCTTAGGAGATTCTTCAAAGCCTCTAATTGGCTTAATGGAAAAACATCCTCATCAAGGTTCTAAAGAACTTGGCCTAGGCTTCAACACCACTTTATCTATTGGTCCAAACATCACTTCTCAAATAGATCAACTTCAACAAGAAGAACAAAACACTAGAAGTGAAAATTTGCATCAACTTGATCTTCTTCCTCAACTCTCCTTCCCATGGAATCCTCCTTCTCAAAACGAGTTTGGAGTCTCACCAAGGGGCTTGGAAGTGAACGTGGTTCCACCGGTAACCGCCGTGGCTATGGCGGAAGATGAAGCTGTTCTTTCATCGTCACCTAACAGTGCAGCATCTTCTTTTCAGATGGATCTCTGTATATACAGCCGTGGTGGAAGTGGTTGTGGTGGCGGCGGCGGTGGGAGTTTGAGTGGCTCAGGCGATGGTGAAGGTTATGATCAAAGAAATTCTTCAAGAGTTAGCGATGAAGACGATAACAGTGGCCTTGGAAACACAAGGAAGAAACTTAGACTCTCAAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCACACTCTAAATCCAAAACAAAAACTGGCACTTGCAAAACAACTCAACCTCCGACCTCGTCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAATATCTAAAGAGATGCTGTGAGACACTAACGGAAGAGAATAGAAGACTACACAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAGTTACCAGCAACTACTTTAACTATGTGTCCTTCTTGTGAACGTGTTGCGACGAATTCTACAGCAACTTCTTCTGTCACTAATACAAGTGCTACTATACATGCTAATGATGATTCAACTTCAAAGGTTAATATTGGATTTCCTTTTGGAAAGTCAAAGTTTCAGCCACAACAACATCTTGAGTTGAATTGA	1002	0.4112	MELGLTLGDSSKPLIGLMEKHPHQGSKELGLGFNTTLSIGPNITSQIDQLQQEEQNTRSENLHQLDLLPQLSFPWNPPSQNEFGVSPRGLEVNVVPPVTAVAMAEDEAVLSSSPNSAASSFQMDLCIYSRGGSGCGGGGGGSLSGSGDGEGYDQRNSSRVSDEDDNSGLGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNTSATIHANDDSTSKVNIGFPFGKSKFQPQQHLELN	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi863g00003	333	SUPERFAMILY	Homeodomain-like	162	230	IPR009057	-
	Vivi863g00003	333	ProSitePatterns	'Homeobox' domain signature.	204	227	IPR017970	GO:0000981\|GO:0006355
	Vivi863g00003	333	Pfam	Homeodomain	173	227	IPR001356	GO:0003677
	Vivi863g00003	333	CDD	homeodomain	173	230	IPR001356	GO:0003677
	Vivi863g00003	333	Pfam	Homeobox associated leucine zipper	229	263	IPR003106	GO:0006355\|GO:0043565
	Vivi863g00003	333	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	48	305	-	-
	Vivi863g00003	333	SMART	HOX_1	171	233	IPR001356	GO:0003677
	Vivi863g00003	333	MobiDBLite	consensus disorder prediction	137	176	-	-
	Vivi863g00003	333	Pfam	HD-ZIP protein N terminus	27	121	IPR006712	GO:0005634
	Vivi863g00003	333	Gene3D	-	177	227	-	-
	Vivi863g00003	333	SMART	halz	229	272	IPR003106	GO:0006355\|GO:0043565
	Vivi863g00003	333	FunFam	Homeobox-leucine zipper protein 18	156	234	-	-
	Vivi863g00003	333	Coils	Coil	242	265	-	-
	Vivi863g00003	333	ProSiteProfiles	'Homeobox' domain profile.	169	229	IPR001356	GO:0003677
	Vivi863g00003	333	MobiDBLite	consensus disorder prediction	155	176	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi863g00003	25	319	Homeobox Transcription Factor Family	AT5G47370	47.635	1.53e-66	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Vivi863g00003		HD-ZIP_N	5e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi863g00003	K09338		-	gmx:100805312	400.979