Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi862g00013 ATGAGACACTCAGATTTGAGTCTCAACTTCATGTTCCTCCTCCTCCTTGTTTCTTATCATCATCACTGCGGTACCGCAGAAGCACAGCCGACAAAACAACAACAACAGTTTCCTTACGGATCTCCAACAACTATATGGGATGTGCCGCCGCTTGGTGTAATTGTTGGAGCCGCCATTGCAACATTTCTCTTAATTTCCATCTTCTTGTTGTTCCTGCGCTACTACTTATGGTCTGAGTCATCAAAATGTGAAGCTTCCATTGGTATCAAGCCTCGACTTCTCAAAACTTTCCCAATTCTACTGTACTCTTCCATCATGAAACATGTTAAGGAAGGTGATGAAGGTACTCTACCATGTGCTGTGTGTCTCGCTGAATTTGATAATAATGACACCATTCGTGTGTTACCTCAATGTAATCATTTCTTTCATCCTCCATGTATTGATGCTTGGCTTTCTACCCATGTCACTTGTCCTGTTTGTCGTACCAACCTCAGTGGTGGCTGTGGAATTGAAACCGTGTAA 522 0.4291 MRHSDLSLNFMFLLLLVSYHHHCGTAEAQPTKQQQQFPYGSPTTIWDVPPLGVIVGAAIATFLLISIFLLFLRYYLWSESSKCEASIGIKPRLLKTFPILLYSSIMKHVKEGDEGTLPCAVCLAEFDNNDTIRVLPQCNHFFHPPCIDAWLSTHVTCPVCRTNLSGGCGIETV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi862g00013 173 SMART ring_2 119 160 IPR001841 -
Vivi862g00013 173 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vivi862g00013 173 CDD RING-H2_EL5-like 119 161 - -
Vivi862g00013 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 166 IPR013083 -
Vivi862g00013 173 PANTHER RING FINGER DOMAIN-CONTAINING 30 164 - -
Vivi862g00013 173 Pfam Ring finger domain 119 161 IPR001841 -
Vivi862g00013 173 SUPERFAMILY RING/U-box 118 164 - -
Vivi862g00013 173 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi862g00013 1 165 Rapid Response to Elicitors AT3G05200 37.158 5.22e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi862g00013 K10664 - vvo:131612393 179.874