Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi862g00005 ATGGCTCCATCGGTGGAACACAATACCGACTCCTCAACCGGCGACTCTCAAAGATTAACTCCGACACCGTTTATCGCTAAGACATACCAGATCGTTGATGATCCCACCATGGACGACGTCGTTTCATGGAACGAAACTGGAACATCGTTCGTCGTTTGGAACCCTACCGTTTTCGCGAGGGATTTGCTTCCTAAGTATTTCAAGCACAATAATTTCTCCAGCTTCGTTCGCCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGGTGGGAATTCTCTAACGAATACTTTCGAAGAGGCGAGAAACGTCTTCTATCAGATATTCAGCGACGGAAAATCGTTTCGAAGTCGCCGCCGGCAGTTATCAATGGCGGTGCAACTCCGACAGCAGCGGTGTCGTCGGTTTCAATTCCGACCTCAAAGCCGACCGTATCGCCGTCAATTTCGGGAGAGGAGCAGGTGATTTCTTCGGATTCGTCGCCGTCGTTTGAGCAGGCGGCGCTAATAGAAGAAAACGAGAGGCTTAAAAAGGAGAACATGCATTTAAGGACGGAAATAGAGGACATGAAATCCCTCTTCAATAATATTTACAATCTTATGTCTAATTATGCCAAATTTCAAGCTGAAAGCGGTGCACAAGGAAAAGAGTGTTGCTCGACGGTAACGAAGACATTTAATTTAATGCCGGAGAAGCGGTACGATGGAGAAGATGCGGCGGGGATGGTGTTGGATGATAATTACCCGAAGCTGTTTGGTGTGGCGATAGGTACCAAGCGGGCGAGAGAAGAAGGAAAGTGTGTTGGGGATATCAGAGTCGTTTGA 828 0.4698 MAPSVEHNTDSSTGDSQRLTPTPFIAKTYQIVDDPTMDDVVSWNETGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNEYFRRGEKRLLSDIQRRKIVSKSPPAVINGGATPTAAVSSVSIPTSKPTVSPSISGEEQVISSDSSPSFEQAALIEENERLKKENMHLRTEIEDMKSLFNNIYNLMSNYAKFQAESGAQGKECCSTVTKTFNLMPEKRYDGEDAAGMVLDDNYPKLFGVAIGTKRAREEGKCVGDIRVV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi862g00005 275 Coils Coil 167 194 - -
Vivi862g00005 275 Gene3D - 16 114 IPR036388 -
Vivi862g00005 275 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Vivi862g00005 275 MobiDBLite consensus disorder prediction 1 20 - -
Vivi862g00005 275 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 CDD bZIP 166 193 - -
Vivi862g00005 275 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 FunFam Heat stress transcription factor B-4 16 114 - -
Vivi862g00005 275 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi862g00005 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 207 IPR027725 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi862g00005 16 275 HSF AT5G62020 48.000 9.08e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi862g00005 HSF_DNA-bind 5.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi862g00005 K09419 - gmx:100780987 318.931