Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi861g00009 ATGGGGTTTGTTCTGAAAAAAAGGAAGAAAGAATTAGAAGAAAAAGAAAATAGAGAGATCATGAGAAAGTCTTTTAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCCAGATGGTGTCTGCCTTCAAATGAGATTGTCTTATAGCCCAGCTGCCCATTTCTTCCTCTTTTTTGTTCAGTGGACTGACTGTTACCTCGCCGGAGCCTTAGGGTTGCTTAAAATTCTTATCTATAAGGCATATAAAGATGGGAAGACAACCATGTCTATATATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCGTCTTTATTGCAACTTCATCGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTTTGCGCTACTAAGTACAGGCATAAAGAGTTGATAAACAAAGGAAAGAGCACTGAAATTGACACAGAAGAAGAGGATGAAGAAGAGTGTGATATTTGCATGGAGATCAACACCATGGTTGTATTGCCCAGTTGCAATCATTCGATGTGTATGAAATGCTACCGAGATTGGCATGGAAGATCGGAATCTTGCCCGTTCTGTCGGGACAGTCTTAAAAGAGTAAACTCGGGTGATCTTTGGATGTACATGAGCAGCAATGAGATAGATGATATTGCTTCAATCAACAAGGAGAATTTGAAAAGACTTTTTATGTATATAGAAAAGTTGCCTCTTGTTGCTAGACCCTATATTCATATCATCTCATCACAGCTTATGGTTGCCTCATAG 801 0.3883 MGFVLKKRKKELEEKENREIMRKSFKDSLKALEADIHFANTLASDYPSDPDGVCLQMRLSYSPAAHFFLFFVQWTDCYLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYRHKELINKGKSTEIDTEEEDEEECDICMEINTMVVLPSCNHSMCMKCYRDWHGRSESCPFCRDSLKRVNSGDLWMYMSSNEIDDIASINKENLKRLFMYIEKLPLVARPYIHIISSQLMVAS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi861g00009 266 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
Vivi861g00009 266 Pfam Zinc finger, C3HC4 type (RING finger) 165 211 - -
Vivi861g00009 266 PANTHER RING FINGER PROTEIN 41, 151 23 250 - -
Vivi861g00009 266 FunFam RING/U-box superfamily protein 144 215 - -
Vivi861g00009 266 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Vivi861g00009 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 214 IPR013083 -
Vivi861g00009 266 SMART ring_2 168 205 IPR001841 -
Vivi861g00009 266 SUPERFAMILY RING/U-box 159 211 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi861g00009 114 210 C3H Transcription Factor Family AT5G01960 29.000 7.51e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi861g00009 K25840 - gmx:100814293 381.719