Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi861g00008 ATGACAAAGGGCAAGGGGACTGGGAAGACTTCGAGGGAAGTACTGAAACCAGTTGATGACCGAAAAGTAGGAAAGCGAAAGGCTGTTTCTAAACCCGAGAAGAGTGCACCGAAGGCTAAAAAGGAGAAGGCTAAGAAAGATCCCAACAAACCAAAAAGGCCTCCCAGCGCTTTCTTTGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCCGCTGTTGGGAAGGCTGGAGGAGAGAAATGGAAATCCTTGACTAAGGCTGAAAAAGCTCCATACGAAGCCAAGGCTGCTAAAAGGAAAGTTGAATATGAAAAACTTATGAACGCATATAATAACAAAGCGGCAAGTTCAGTCGAGGATGAAGACGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAATGAAGATGAAGCAAGTGGAGAGGATGACCACCAAGATGACGATGATGAAGACGACGAGGACGAAGATGACGAAGAAGATGATGACTGA 516 0.4399 MTKGKGTGKTSREVLKPVDDRKVGKRKAVSKPEKSAPKAKKEKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNNKAASSVEDEDEESDKSKSEVNNEDEASGEDDHQDDDDEDDEDEDDEEDDD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi861g00008 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 155 IPR031061 -
Vivi861g00008 171 SUPERFAMILY HMG-box 36 120 IPR036910 -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 125 144 - -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 9 52 - -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 145 171 - -
Vivi861g00008 171 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 1 56 - -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 120 171 - -
Vivi861g00008 171 CDD HMG-box_AtHMGB1-like 52 112 - -
Vivi861g00008 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Vivi861g00008 171 MobiDBLite consensus disorder prediction 83 102 - -
Vivi861g00008 171 SMART hmgende2 50 121 IPR009071 -
Vivi861g00008 171 Gene3D High mobility group box domain 34 137 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi861g00008 HMG_box 2.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi861g00008 K25507 - gmx:100499704 193.356