Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi85g00069 ATGATGAGGTTGCAGACATACGCAGGTCTTAGTTTAATTGCGACTTTGGCTGTAACATATCATGCATTTAACAGTAGAGGCCAATTTTATCCGGCAATGGTTTATCTAGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGCTCTAGTCATCATGTGTAGTATGTGGCAGTTAACTAAAAAGGTGTTTCTCGGCTCGCTTCGAGAAGCGGAGGTCGAGAGGCTTAACGAGCAAGCGTGGAGGGAGGTTATGGAAATTCTCTTTGCGATTACTATCTTTAGGCAGGACTTCTCTATTACTTTCCTTGCTATGGTTACAGCGCTGTTGTTGATTAAGGCCTTGCATTGGTTGGCTCAGAAGAGAGTAGAGTATATAGAGACTACACCTTCCGTGTCTTTGTTGTCTCAAGTTCGGATTGTGTCTTTTTTGGGTTTCCTTCTTCTTATAGATGGGACGTTTTTGTATAGATCGGTGAAGCATTTACTAGCTACAAAGCAGGCATCGGTTTCGCTCTTCTTTTCTTTTGAGTACATGATACTAGCAACAACAACGGTAGCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTTTTCACGTTTTACTTGGATCTTGTTAAGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTGGCAATTTTCATAAACTATGGAGTTCCTTTGCATTTAATAAGGGAGCTGTATGAGACATTTAGGAACTTCAAAATCCGTGTTGCAGATTACTTACGTTATCGTAAGATCACTTCTAACATGAATGACCGGTTTCCAGATGCAACCCCTGAAGAGCTTATTGCAAGTGATGCAACCTGCATCATCTGTCGTGAAGAGATGGCTACTGCAAAGAAACTTATATGTGGTCATCTTTTTCATGTTCACTGCCTTCGATCATGGCTAGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTCCCAACGGAAAATGGTAGTACTGCTGCTGGTGGGCAGCAAAGGTCACAGTCAGATGCTCATCGGCATGGGGCAGGCACTGGAAGCTCAGCTCAAAATGAGGTTGGCAATGGTGTGGCATGTGATAGTTTGAGTCGACATCAAGCAAGACTTCAAGCTGCTGCCTCAGCTGCTTCAATATATGAGAAGTCTTATGTTTACCCTTCTCCAACTTTTGCTTGCCCACCTCCTGGTTACCCTCTTCATCCCATGGTTCAAAGATCTGTGGTTGAATCATCTAATGCCGAACTTGATGGAGAACGAGATCAAAGGAAACTCCAGAGTGAGAAACCAAATGTTGACAAAAGTGTAGGCGAGGACACATCATTATCAGATAGCAAAGGCAAACAAATTGCTGCCCCTTCATCTGTATGA 1413 0.4282 MMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVYLATSKISLVLLLNMALVIMCSMWQLTKKVFLGSLREAEVERLNEQAWREVMEILFAITIFRQDFSITFLAMVTALLLIKALHWLAQKRVEYIETTPSVSLLSQVRIVSFLGFLLLIDGTFLYRSVKHLLATKQASVSLFFSFEYMILATTTVAIFVKYIFYVSDMLMEGQWEKKPVFTFYLDLVKDLLHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELIASDATCIICREEMATAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGSTAAGGQQRSQSDAHRHGAGTGSSAQNEVGNGVACDSLSRHQARLQAAASAASIYEKSYVYPSPTFACPPPGYPLHPMVQRSVVESSNAELDGERDQRKLQSEKPNVDKSVGEDTSLSDSKGKQIAAPSSV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi85g00069 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Vivi85g00069 470 PANTHER RING ZINC FINGER PROTEIN 1 410 - -
Vivi85g00069 470 SUPERFAMILY RING/U-box 272 336 - -
Vivi85g00069 470 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Vivi85g00069 470 MobiDBLite consensus disorder prediction 340 370 - -
Vivi85g00069 470 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Vivi85g00069 470 CDD RING-H2_synoviolin 289 330 - -
Vivi85g00069 470 MobiDBLite consensus disorder prediction 424 470 - -
Vivi85g00069 470 SMART ring_2 292 329 IPR001841 -
Vivi85g00069 470 MobiDBLite consensus disorder prediction 427 455 - -
Vivi85g00069 470 Pfam Ring finger domain 291 330 IPR001841 -
Vivi85g00069 470 MobiDBLite consensus disorder prediction 456 470 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi85g00069 1 413 C3H Transcription Factor Family AT3G16090 76.145 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi85g00069 K10601 - gmx:100816441 699.508