Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi857g00004 ATGGAGCAAGCATTGATTGGCGCACTGAACTACGTATCTCGAAATCTTCCTCTTCCGCCTGAACTCTTCAACACCGTTTCTTCTATCTGTTATGGATCTGAACCTAAACCCTCACCTCTCAACTCCTCGGATGATGGGAACAATTCTACACAAGACGAAGATTTACTGACTGAGCTTCAAGATGCACTGTCCAAACAACGACCTAATTGCGATTCTAGTTCCAAATTAAACAAAGCAATTAAAATTCGTTCGTTAACTCGGATTCAGCACCGCTTAACTCAGCTTGAAGGATTGCCTTCCAGGTTGGGAGATGACCTACAGACGAGGTGCTTGCTCGAGCTTTATGGACTAAAGCTGGCGGAGTTGCAGGGGAAGGTTAGGATGGAAGTGAGCTCTGAGTATTCGCTTAATGTTAAATGTGCATATCCCGACAAACAATTATTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTTGGAGATCCATTTGCCATTGATGCTGCTGATGATCAAATAAGGAAGAAGCGGGACACGGAGAGACTATCTAGATTAGAAGAGCAAGCAAAAAGTCAAACAGAGACCAGAACAAGAAGATTTTTTGCAGAAATACTCAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAAGTTCATTGAAGAGAAGAAAACAGAGGAATGATGCTGTCCAGGCATGGCATGGAAAGCAAAGACAACGGGCAACTCGGGCAGAGAAGTTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTCGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAGCGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAAATTCAGAGGCTTGTTTACCACAGTCAGATACTTTGAAGGATGGAATTTCTAAGGAATCGCCTCTTGATGAAGATGTGGATTTAATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGCCAGCGGCAATACAATTCTGCCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTACTCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCTTATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAGCGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTCTATACGATGGACGGATGGATGAGAGAAAAGCAATAAGGGAAGAGCTCTCAAGGGAGGGAAAATTTCATGTTCTGATAACACATTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAAAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTATCACATTGAGCGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAGCATTTTCAATTCGGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTATCCTTAACAGATGAAGAACAGTTATTGATTATTCGCCGTCTGCATCAGGTCATAAGGCCCTTCATACTGAGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCGGGGAAATCTCAGGTCATACTGAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTAGGCAGAGTTGGGTTAGACAATGGTTGTGGAAAATCAAAGAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATAATCGTAAGGAGGAGATTGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTTCGTAGAGCTGGACATAGAGTCCTCCTTTTCTCACAAATGACTCGTCTCATGGACATTCTTGAAGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGACGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCCGACTCTCCATACTTTATGTTTCTCTTGAGCACTCGTGCCGGAGGACTTGGTTTAAACTTGCAAACAGCAGATACAGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAAGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAGTTGAAGAGGTGATTTTAGAACGTGCTAAACAAAAGATGGGGATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACATCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTTGGAACAGACGTGCCAAGTGAGAGAGAGATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTTGAGAGAATGGACGAAGATAGAAGACAAAAGGAGAATTACAGATCTCGTCTCATGACAGAGCATGAACTTCCAGATTGGGTATATTCTGCAGTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCAGTGGTATTACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTTCAATGGATGAAGGCTGTGGAAAATGGACAAGATATATCCAGGCTTTCAGCCAAAGGAAAAAGAAGAAACCACCTCCCTGCTGACAGCCATACACAAACGAGTGATGACACTGCGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCGTTGAAAATGAGAGATCAAGTGAAGATACTTTCAATGCGACCCCTGCCTGTAAGAGACTAAAACATGAAGAAATTAGTTCTCATAAACATGAAAAGGTGGACGTTGGAGGAAGTGGTTTGAAGGAGCATGTATTTTCTTGGAATGTTCACAGAAAGAAAAGGTCAAGCTATCTTAGCCAGGGTTCGGTATCTGATACCAAAGGGCAGAATGCAAATGGAAGAAGATCAAGCTAA 3237 0.4201 MEQALIGALNYVSRNLPLPPELFNTVSSICYGSEPKPSPLNSSDDGNNSTQDEDLLTELQDALSKQRPNCDSSSKLNKAIKIRSLTRIQHRLTQLEGLPSRLGDDLQTRCLLELYGLKLAELQGKVRMEVSSEYSLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFAIDAADDQIRKKRDTERLSRLEEQAKSQTETRTRRFFAEILNAVREFQLQIQSSLKRRKQRNDAVQAWHGKQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLENSEACLPQSDTLKDGISKESPLDEDVDLMDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSTLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVSEFSTWAPSITAVLYDGRMDERKAIREELSREGKFHVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYHIERRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGCGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMTEHELPDWVYSAVNKDDKVKAFDSSGITGKRKRKEVVYADTLSDLQWMKAVENGQDISRLSAKGKRRNHLPADSHTQTSDDTAAEERLLELSNTVENERSSEDTFNATPACKRLKHEEISSHKHEKVDVGGSGLKEHVFSWNVHRKKRSSYLSQGSVSDTKGQNANGRRSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi857g00004 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 171 991 - -
Vivi857g00004 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 602 IPR027417 -
Vivi857g00004 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Vivi857g00004 1078 MobiDBLite consensus disorder prediction 294 315 - -
Vivi857g00004 1078 MobiDBLite consensus disorder prediction 294 347 - -
Vivi857g00004 1078 Gene3D - 368 611 IPR038718 -
Vivi857g00004 1078 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Vivi857g00004 1078 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Vivi857g00004 1078 MobiDBLite consensus disorder prediction 966 990 - -
Vivi857g00004 1078 FunFam Probable ATP-dependent DNA helicase CHR12 608 907 - -
Vivi857g00004 1078 FunFam Chromatin structure-remodeling complex protein SYD 368 611 - -
Vivi857g00004 1078 SMART ultradead3 373 566 IPR014001 -
Vivi857g00004 1078 CDD SF2_C_SNF 679 812 - -
Vivi857g00004 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 890 955 IPR029295 GO:0042393
Vivi857g00004 1078 MobiDBLite consensus disorder prediction 1054 1078 - -
Vivi857g00004 1078 SMART helicmild6 717 801 IPR001650 -
Vivi857g00004 1078 SMART SnAC_2 894 955 IPR029295 GO:0042393
Vivi857g00004 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 856 IPR027417 -
Vivi857g00004 1078 Gene3D - 612 832 IPR027417 -
Vivi857g00004 1078 Coils Coil 177 197 - -
Vivi857g00004 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 858 IPR001650 -
Vivi857g00004 1078 MobiDBLite consensus disorder prediction 965 990 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi857g00004 684 829 RAD5 or RAD16-like Gene Family AT5G43530 37.333 5.23e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi857g00004 SNF2_N 4.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi857g00004 - - gmx:100775993 1743.01