Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi852g00027 ATGATATTTGTACTTTCTCTATCTGTATGTATAAAAGTGAATCCACATATTATCTCACAACTGTTCCTACTCTCTCATCTCAAAAACACTATATACCTTTTCTCTTTTTCTCTTCCATCAATGGCAGACCCTTACTCCAATTTCTTCTCTTCAAATTTCTTTCAATTCAACCATTACCCTTCTTCAAACCCTTCACCCCACCACCACCATCACAATCATCATCATCCTAATTATCTTCACAACTTCATCAATCACACATCCTTCAACAACACTAACAACAACACTTTTTTCCACTACCATCACCATCACCATCTTCACTCTACTACATCTTCACCTCCTTCCCCTCCTTTAAAAGAAGCTCTTCCACTTTTGAGCCTAATCCCTACAAAACAAGAAGAACATGAATATCATATTCATCACCATCATCATCATGAAGATGAACCCCTCTCTTTAATGGATGTGGAAGATAAAAATCACAAAGTAGATGAAAAGGATCATCAAGGTGTCACTGTTGCACTACATATAGGGTTACCAAACCCTAGTGCTGCTGAGATTGCAAATATGATGATATCTTCATCTTCTTCTGAGACTATGATCAATGAAAGAGATCAACAACATCAACATCAACATCAACAAGAACAACAACAAGGAGATGTTATAAGTGAAGATTCATCATCTTATGATTTGTTGAGTAGTAATAGATCAATGAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTAATCGGTCCTACACAGTTTTCTTGTCCAGTTTGCTACAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCATGCTACTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCGAGAGCGAAACCGTTGAAAGATTTCAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCCTTCATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTAAGAGGAGACTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGATCACTAAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATTGATCGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTAGAACAAGATAATGAGTCCACTCAGACTCAGTAG 1260 0.3786 MIFVLSLSVCIKVNPHIISQLFLLSHLKNTIYLFSFSLPSMADPYSNFFSSNFFQFNHYPSSNPSPHHHHHNHHHPNYLHNFINHTSFNNTNNNTFFHYHHHHHLHSTTSSPPSPPLKEALPLLSLIPTKQEEHEYHIHHHHHHEDEPLSLMDVEDKNHKVDEKDHQGVTVALHIGLPNPSAAEIANMMISSSSSETMINERDQQHQHQHQQEQQQGDVISEDSSSYDLLSSNRSMNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDRFEEEDEPASEVEQDNESTQTQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi852g00027 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Vivi852g00027 419 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Vivi852g00027 419 MobiDBLite consensus disorder prediction 210 231 - -
Vivi852g00027 419 Gene3D Classic Zinc Finger 316 393 - -
Vivi852g00027 419 PANTHER ZINC FINGER PROTEIN WIP2 83 414 IPR043584 GO:0003700|GO:0010468
Vivi852g00027 419 MobiDBLite consensus disorder prediction 194 231 - -
Vivi852g00027 419 FunFam Zinc finger protein WIP2 309 391 - -
Vivi852g00027 419 Gene3D Classic Zinc Finger 255 278 - -
Vivi852g00027 419 FunFam zinc finger protein WIP2-like 255 278 - -
Vivi852g00027 419 SMART c2h2final6 256 278 IPR013087 -
Vivi852g00027 419 SMART c2h2final6 340 360 IPR013087 -
Vivi852g00027 419 SUPERFAMILY beta-beta-alpha zinc fingers 322 360 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi852g00027 41 419 C2H2 Transcription Factor Family AT3G57670 61.307 5.33e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi852g00027 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi852g00027 - - tpra:123897861 511.531