Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi852g00022 ATGGAAGATTATGAGGTTATAGAGAAACTTGGGAGAGGAGCTTTAGGTGCAACTTTTCTTGTTCTTCATAAAACTGATAGAAAGAGGTATGTGTTGAAGAAGATTCGTTTGTCTAAGCATACAGAGAAGTCCAAATTGACAGCGTACCAAGAGATGGACCTGATAGCAAACCTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTTTAAGCGGCTTTTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAATCTCGAGGATCTTTTTTTCCGGAGGAGAAAGTCTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACTTGCACTCTAACCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAACAACATTCGTCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGACGATCCTGCTTCTTCGGTTGTTGGAACTCTAAATTACATGTGTCCTGAAATCTTTGCCGATATGCCGTACGGTTATAAATCTGACATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCAGCGTTTCGTGCTCCAGACAGGGCCGGGCTTATCAATAAAATAAATAGATCCACTATTTCTCCATTGCCAATTGTTTACTCTTCCACATTGAAACAGATTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCGGCTGATTTGTTGAGACATCCTCATTTACAACCTTTTGTTCTCCGCTCTCGTAACACGCCATCTGTTTTTCTTCCTGTACATCTCATAAGTTGTAACTCACCGAAAAAATCTTACAAATCTAACGGTGGCAAGGACAATAGGGACAAAGAAGAAGGGTTTGTAAACCGTTTGGATCGAGTTTATCCGATTGAGGGAGAAGGAGATGTACAAACAAGAAACCGCAAATTAGCAGTGTCAACGAGCACAGAAGACAACCTTGAGACTAAAATGGTTGATCCTACCAGCTACCCGTTGGAATTTTCTACTAGTATTAGTGGCTCAAAGGACGAGTCAACAACATCTGAATCAACCGTTTGCAGTGTGTGCAAGGAAGCAGATTTCAAAAGTAGAGCTGTAAGAGACATGGCCGACACAGAGGTCACTTCAAAGAGTACACTAGATTCAATGCATGAAAAACAAGTATTTGCTACTGGGCAACTTCCGAAGTCGAATGCAAATGCAGCGACTAAAAAAGTTGAATATAGTTTTTCTAATAAAGTTTTCGATAAAGATGAAGTGCATAAGGAAGCTGCAAAACATGGGCACTCTAGTAAAACAATAATCTCCAGTGAAGACAGCAATGGAAATGATGAAGATGCGGTCACATCACAATGTACTCCAGATAAATACAAATTTTCCAATAAAGGTTTTGGTGAGGCAGAAGTGCAGAAAGAAAAAGCAAAACCTGAGGACTTCATCAAATCGATAATGTCCAGTGAATATAGAACTGGTAATAATATAGATGGGTGCATTGATGAGGTCACTTCGGAAAGTACACTAGAGTTTTTGCTTGTAGAACAATTTATCACCGAACATTTTCAGAATCCTGATGCATTTGACATAAATGCAGTAACAAAAGAAGTTGAAGGTAGTTTTACCGAAGGTTATTTTGATACTCTTTCCGATGTTGGCTTTGATACTTTTTCCGAAGTGCTTACAGAAGATGCCAAACCCGAGGAGTCTAGTAAATCAATCATTTACAGCAACGACTGCAATCAAAATGATAAAGAATGCTGTATTGATGATATCACTTCAAAGAGCACACTGGATTCGGTGAATGAAGAACAAGAAGTTGTCGCTGAGAATTTTCCAAAATCGAATACATCGGTGACTACAAAGACTGATGGCACACTTTCCAGCCAATGTTTTGATAAAGATGAAGCACAGAGAGAAGATGCCCTACCTGAGGACTCAAGTAAATCAATCATTTTCCGCCAAGGCTGCAATGGAAATGATAAAGAACGGTCCACTGATGATATCAGTATCACTTCAAAGAGAACATTGGATTCTTTACACGAAGAACAAAAATTTGCCGCTGAAGATTTTCAGAAGTCAAATACAAATGACATAAATCTAGTGACTTCAAAAGTTGATGATACTCTTTCCAATAAAGAATTTGATTTAGGTGAACCACAAAGAGAAGATGTCAAACCCGAGGACTCAAGTAAATCAATCATTTACAACAATGACAATGACAATGACAAAGAGGAGTCTTGTGATGAGGTCACATCAACGAGCACCCTAAGTTCTGTGCATGAAGAGCGACGACTTTCGGCTGAACAATTTCAGAAGCCAGATACAAATGACATAAATCCAGTGACTTCACATCTTGATGATACTCTTTCCGTTAAAGAGTTTGATAAAGCCGAACCAGAAAGAGAAGATGCCAAATCTGAGGACTCAAGTAAATCAATCATTTACAACGATGGCAATGACAAAAAGGGGTCTACCGATGAGGTCACATCAACGAGCACACTTGATTCTGTGCATGAAGAGCCACGACTTTCTGTTGAACACTTTCAGAAGCCAGATACAAATGACATAAATCCAGTGACTTCAAAAGTTGAATATACTCTTTCCAGTAAAGAGTTTGATAAAGCTCAAACACAAAGAGAAGATGTCAAACCTGAGGACTCAAGTAAATCAATCATTTACAACAATGGCAATGACAAAGAGGGGTCTAAGGATGAGGTCACATCTACAAGGACACTCGATTCTGTGCATGAAGAGCGGCGACTTTCTGTTGAACACTTTCAGAAGCCAGATACAAATGACATAACTCCAGTGACTTCACAAGTTGATGATACTGTTTCCAGTAAAGAGTTTGATAAAGCCGAACCAGAAAGAGAAGATGCCAAACCTGAGGACTCAAGTAAATCAATCATTTACAACAATGGCAATGACAAAGAGTGGTCTACTGATAAGGTCACATCAACGAGCACACTCGATTCTGTGGATGAAGAGCCACGACTTTCTGTTGAACACTTTCAGAAGCAAGATACAAATGACATAAATGCAGTGACTGTTAAAGTTGATGGTGCTTTTTCCAATGAAGGTTTTGATAAATTTGAAGGTAGCAGCGACAGTGATAAAATCGGTTTCATCGATGAAGAAATGGCATCAACAAATGTGCATTCTGTTAGGGTTGAACAAGACCCTGATACAGTAAGCTGCTTGAAAGAAAGTGAAAATTCACAATCATTAACAGAAGACTCACACACGAACATTCTGACTTCTGAGAGCAATGGTACTCTCTCAGCTAAGCATGAAGGCAGAGAAAACACACACATAATCAGTCGTGCCATACATAAAGACGATAAAAATGCCACTGTGATTGATAAAACCCCAAATGAAATTTCCTTAAGTACAAATATTTCAGTAGTCGGTGATAAAACGAAGAGGGTGTTGAAAAATTCCGGCCAACAAAGAGCTGATGCTTTGGAATCTTTACTTGAGTTATGTGCTCATTTACTTAAGCAAGGAAAGCTAGAAGAGCTTGCTGCGGTGCTAAGACCATTTGGAGAAGACACAGTTTCATCCAGAGAAACAGCCATATGGCTGACAAAAAGCCTGGTGTCATCGCAAAAATTTAATCCGGAAACCTAG 3672 0.3952 MEDYEVIEKLGRGALGATFLVLHKTDRKRYVLKKIRLSKHTEKSKLTAYQEMDLIANLNYPYIVEYKDAWVEKEDYIYILSGFCEGGDMAENIKKSRGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDPASSVVGTLNYMCPEIFADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLKQIIKSMLRKNPEHRPTAADLLRHPHLQPFVLRSRNTPSVFLPVHLISCNSPKKSYKSNGGKDNRDKEEGFVNRLDRVYPIEGEGDVQTRNRKLAVSTSTEDNLETKMVDPTSYPLEFSTSISGSKDESTTSESTVCSVCKEADFKSRAVRDMADTEVTSKSTLDSMHEKQVFATGQLPKSNANAATKKVEYSFSNKVFDKDEVHKEAAKHGHSSKTIISSEDSNGNDEDAVTSQCTPDKYKFSNKGFGEAEVQKEKAKPEDFIKSIMSSEYRTGNNIDGCIDEVTSESTLEFLLVEQFITEHFQNPDAFDINAVTKEVEGSFTEGYFDTLSDVGFDTFSEVLTEDAKPEESSKSIIYSNDCNQNDKECCIDDITSKSTLDSVNEEQEVVAENFPKSNTSVTTKTDGTLSSQCFDKDEAQREDALPEDSSKSIIFRQGCNGNDKERSTDDISITSKRTLDSLHEEQKFAAEDFQKSNTNDINLVTSKVDDTLSNKEFDLGEPQREDVKPEDSSKSIIYNNDNDNDKEESCDEVTSTSTLSSVHEERRLSAEQFQKPDTNDINPVTSHLDDTLSVKEFDKAEPEREDAKSEDSSKSIIYNDGNDKKGSTDEVTSTSTLDSVHEEPRLSVEHFQKPDTNDINPVTSKVEYTLSSKEFDKAQTQREDVKPEDSSKSIIYNNGNDKEGSKDEVTSTRTLDSVHEERRLSVEHFQKPDTNDITPVTSQVDDTVSSKEFDKAEPEREDAKPEDSSKSIIYNNGNDKEWSTDKVTSTSTLDSVDEEPRLSVEHFQKQDTNDINAVTVKVDGAFSNEGFDKFEGSSDSDKIGFIDEEMASTNVHSVRVEQDPDTVSCLKESENSQSLTEDSHTNILTSESNGTLSAKHEGRENTHIISRAIHKDDKNATVIDKTPNEISLSTNISVVGDKTKRVLKNSGQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLVSSQKFNPET 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi852g00022 1223 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi852g00022 1223 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 785 800 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 864 880 - -
Vivi852g00022 1223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 881 901 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 648 680 - -
Vivi852g00022 1223 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 1083 1107 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 980 997 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 942 958 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 728 997 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 1083 1114 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 436 467 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 959 979 - -
Vivi852g00022 1223 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 449 467 - -
Vivi852g00022 1223 SUPERFAMILY Protein kinase-like (PK-like) 1 282 IPR011009 -
Vivi852g00022 1223 CDD STKc_Nek 3 258 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 802 824 - -
Vivi852g00022 1223 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi852g00022 1223 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 759 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 728 743 - -
Vivi852g00022 1223 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 912 941 - -
Vivi852g00022 1223 MobiDBLite consensus disorder prediction 825 852 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi852g00022 4 259 MAP Kinase Kinase Kinase AT3G13530 31.907 8.64e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi852g00022 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi852g00022 K08857 - gmx:100818558 992.645