Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi852g00014 ATGATTTGTATCTATTGGAACATAAGAGGAATTGCAAACAACTCTTCTCGAGCTGCCCTAAAGAATCTCATTCTTAAGAACTCTCCAGACTTTGTATTTATTGCTGAGCCCTGGATGAATTTTGATAACTTTCCTAAAGCTTGGTTAAACAGGTTTGATCTTAAATTATTTGCTACTAATAGTAGAGATAATCTTCTTCCTAACATTTGGTGTCTCTGTAAGTCTCACCTTAATCCTGTTATTATTGATTCTAAGGATCAATATGTGTCTTTTACTATTAATCACAATGATACTTTGCTAGGTTTTTCTGTTGTTTATGCTGCCACTAATTACATCTCTAGAAGGCATCTCTGGGCCTCCCTAGGCAACATCATGCCTAATACCCCCTGGTCTTTTATAGGAGATTTTAACTCTATTGTGAGCAGTGATGAGTACAAAGGTCACTCCACTCCTTCTAAAGCTCCTATCAAGGATTTCTTTAACTGGACTGATAGTAACAACTTGATTCATCTCCCTACCCTAGGTAATCCTTTCACTTGGTGTAATGGTAGGAAGGGCAGACTTAGAACTGAAAAGAGGCTTGATAGAGTCATTTGCAATCTGGATCTCATAGATGTGTGTAATTCTGTTAATTGCAATACTCTCCCTAAAGTGAAATCCGATCACTATCCTCTCCTCTTTACCATAAATCTGGGTAAGGTCAGTTTTAAATCCCAATTTAGATTCCTTAGTATTTGGTCTAAAAATGAGGAGTGTCTTAAAATCATTGAAGAGGTTTGGAAAACCAAATTTTGGGGCTGCCCTATGTATGTCTTAGACAGGAAACTTAAGCTTCTCAAGGCAAAACTTAAGGAATGGAATAAGAACTCTTTTGGTGATGTCACTGTTAAAGTTAAAAATGCTGAGGTTAAACTCATGAACATTCAAGATGACATTAGTAAACATGGCTACTCTGACTCCTTACAGGATGATGAGATTATGGCTCAGCATGAGCTTGAGCAAGCTCTTAACATTGAAGAAGATTTTTGGAGAGAGAAGTCTAGAGTCAATTGGCAGGTTCATGGAGATAGAAACACTAGGTTCTTCCACACATATGCTAAAATTAGAAGGAGAACTAGTCTCATTAATTCTCTGCTTATTAACAACCAGGTGGTTTCTGATCAAAATATTTTGGAGGATCACATTGTTAGCCATTTCAAAAACCTTTATAATACTGATTTTGTCCACCAGGAAAACAACCTCATTAATTCCTGTGTTCCTTCCATTGTGAATAATAGGTCTAATGATATGTTGACTATGATTCCTAATGCTGAGGAGATTCACAGGGCTGTCTTAAACCTTAAAGCTACTGCTGCCCCTGGCCCTGATGGCTTTGGTGGTACTTTCTACCATAGCTATTGGAATGTCATTAAGAATGATGTTATTGATGCTGTGACACAGTTTTTCATTCAGGATTGGATTCTGCCCAACTTTAATGCTAATAGCTTGGTCCTCATCCCAAAGGTGAAAGAAGCCAACACTATAGGGCAATTTAGACCTATTGCCCTAGCTAACTTTAAGTTCAAAATCATATCTAAGATTATTGCTGACAGACTCTCCTCTATCCTTCCCAATTTAATCTCTAGTGAGCAAAAAGGGTTTGTGCTAGGTAGAAACATAAGGGATGGCATATGCCTTACCTCTGAAGCTATTAACAATCTCAATAACAAGGGTTTTAGTGGCAACGTTGCCCTTAAAATTGACATTGCCAAAGCCTTTGACACTCTTAATTGGACTTTTCTTATTCATACTCTTAAAGCTTTTGGTTTTCATGACAGGTTCTGTAAGTGGATTCATCTTATTCTCACATCTGCAACCATGTCCATAGGGTTTAATGGTAGTCAACTTGGTTATTTCAATTGTTCTAATGGCCTGAGACAAGGAGACCCCCTGTCTCCTCTTCTCTTTTGCATTGCTGAGGATGTGCTGAGCAGAGGAATCACAAACCTTGTTATTAATGACAAGATAAACCTTATAAAAGCTAACAGATCTCATCTTGTTCCTTCTCACACTCTTTTTGCTGATGACATCATGATTTTCTGCAGGGGTGACACTAAATCCCTCAAGGCTATCTCTGATCTTTTGCTTTGCTATGGCAACTACTCAGGGCAGTTTTGTAACAACTCTAAATCCCTTATTTATGCTGGTGGCATGACTCATTCTAGACATAGTTACTTGGCTGATATTATTGGTTTCACAATTGCTGTCCCTCCTTTTATATACCTTGGTGTCCCAATCTTTGTTGGCAGGCCTAAAGTTTCTTATTTTAATCCTATTGCAGATAATATCAGACTGAAACTTGCTGCTTGGAAGGCTAGATCCCTCACTATGGCTGGCAGGGTCCAACTTGTCAAATCTGTCATCCATAGCATGTTGGTGCATTGTATGTCTATTTACAATTGGCCTGGCAGTCTCATCAAAAAGCTTGAAAGATGGATCAGAAACTTCATATGGAGTGGGAACACTGACCAAAAGAAGATTGTTACCGTTGCTTGGAAGTCATGTTGCAAAAAAATCAATGAAGGTGGATTGGGAATTATTTCAATTAGTGCTTTCAATTCTGCCACAAACCTTCAACTTTGCTGGAAATTTGCCAATAGTAATCAAGCTTGGTCTCAACTTCTAAATGCCCGCGTGAGGAAGAATAGTAGGCTCATCAAGTACTCTATAAAGTCATCCATATGGACTGGGATAAAAGTCTATTATGCAGCTGTTATGGAGAATTGTATTTGGAGTGTAGGCAATGGCAACACTGTGAACTTCTGGCTTGACAACTGGGTGGGAGAAACCCTAGCTAATAAGTTTAAGGTCCCAGGTCAGTTTCACAATTCCCTTGTCTCTAAGGTTAGAGATTGGTGGAACTCTGAGGCCTGGTCGATAAATTCTAACATTCAAACTGCTATCCCTGATCTTTTGAGCACTATATCTAAATTCTCCATAAGTGACTTGTCTCCCGATCTCCTTGCCTGGAAAAACTCTGTCAATGGGGCTCTTTCTCTTAAGGAGGCCTACAATTTTTTCCTTAAGCCTAGCCCTCAGTCAGCTTGGTCCTCCTTTCCTTGGGATAAAGATACTTCCCCTTCACACTCCATGATAGTTTGGAGATATATGCACAACAAGTTGCCAACCGATGATAATCTAGCCAAACGAGGATTCCATTATCCTTCAGTCTGCAACTTGTGCTTCTCTGCTCAGGATAATGCTCTTCATCTATTCTTTGAATGCAGTTTTGCCAAAAATATTTGGTCTTGGTTCTGTGATAATACGCAGTTTCAGCATGGCATCAATTGCTTAGAGGATTGCAGGATTTTCTTGTCTCTAAGCTGGTCTAAGCAAGCTGCAGCTGTGATTCATGCTTCTTTAGTCAGTTTCTTCTACTTTGTTTGGACTGCTAGAAACAGGGCTAGGTTTGAGGACAAACACACTCACTGGAAGTCGTGTACCTCTTTGATTGCTGCTCATGCTAGTTTGGTGGGATGCTGTACCTCCAGGTGTTCCAATGACAGCATGCTGAGTTTCTGTCTTCTTAAGAAATTCAACATACAAATACATCCTAGTAAGCCTCTTATCACTAAGCCTATTGTGTGGTCTCCCCCTCTGTATGACTGGTTTAAGTGTAATGTTGATGGAGTTTCCACTGGAAATGCTAGAATGGCAGCTTGTGGAGGTATTTTCAGGGATCATAATGCTAACCATATATTGAGTTTTTCTGTTTTCCTTGGCCCTGAGTCGGCTATTATTGCTGAGTTCATGGCAGCTATTTTGTGTATAGAAGCTGCTGAAAAGAACAACTTTAGGAAACTCTGGGTTGAATCTGACTGCATTATAGTTGTTAATGCTTTTAAGGACCATCTTTTAGTCCCTTGGAAAATTCGCTCTCGCTGGCTTAAGTGTTTGGATTACACCTTGAAGATTGATTTTCTTTGCACTCACATTTTAAGAGAAGCCAATTTTTGTGCGGATTCCTTGGCGAATTTCGGTCTTACTTGTAAAGATACGCAATGGTTTAATTATGTTATTAAGGATATCAATAGGGATTTCTTGTTAGACAAGGCTGAGTTATATTTACTTAGAAAAATGGATCATTTACTTGAGAGTCCTATTGAAAGTTTTGGGAATGAAACTGATTCCAATGAGCCAAGGAATAATGGTTCAGTAAGAAAGGAGAATGAAGGAAATGAAGTAAAAAAAGCAAAAAGCGTTGATAAGATCCATAAGAATGATATTGATCTAAAGAGCTCAAAATATAGGGGTGTTATCAAATCCAATAATAATCGGTATGAAGCATTTGTTTGGGAACATAACACGAGAAAAGGAGGGTGGGGAAAGACAGTTTATATTGGAGAATTTGAAACTGAAATTGAAGCTGCCAAAGCTCATGATTTATTTGCTATTGAGAAATGGGGAGAATCTACTATTACAAATTTTCCAGTATGTAAGTATCGTGCTTTAGTTGTTTCTTCTGTTCGGGGGAGGACATCAGGTTTCCAATCTAATTCTACTTGGTGTAAATGTGTGTCCATTCTTGAGTTCAAAATGGATGAACCTCTAATTGACACTGAGGAAAAAGCTGCTAGAGCATATGATGCAGCAGCAAAAAGATTGATTGAAGATGATGCATATACTAATTTTTGTCATGATAATGGTAATGAAGATAATTTAGAAAACAAGGAAAGTAAAAATACAGTTTTAAATCAACAAGCTTTTGTTTCAAGTTCTTCAATATCGAAGGAACAAGCCATAGTTATGGATGATAATGATGCTTATCAACACAATGAGGAATACCAATATCATAAAGCACTGCTGCATCAACATGATGACATCGACCCATCATCTCCGATTGTGCTATATAATTTCATTTATAATTCGTTTTATGTAGTTGGAAAAGACGGAATAATCAATTCCGGAGACTCTTCAAACCAAGGAGCAGAAGATAAAGGTAATGTTAATTCACTCCAAGATGCGAGTGATGATGAATAG 5019 0.3825 MICIYWNIRGIANNSSRAALKNLILKNSPDFVFIAEPWMNFDNFPKAWLNRFDLKLFATNSRDNLLPNIWCLCKSHLNPVIIDSKDQYVSFTINHNDTLLGFSVVYAATNYISRRHLWASLGNIMPNTPWSFIGDFNSIVSSDEYKGHSTPSKAPIKDFFNWTDSNNLIHLPTLGNPFTWCNGRKGRLRTEKRLDRVICNLDLIDVCNSVNCNTLPKVKSDHYPLLFTINLGKVSFKSQFRFLSIWSKNEECLKIIEEVWKTKFWGCPMYVLDRKLKLLKAKLKEWNKNSFGDVTVKVKNAEVKLMNIQDDISKHGYSDSLQDDEIMAQHELEQALNIEEDFWREKSRVNWQVHGDRNTRFFHTYAKIRRRTSLINSLLINNQVVSDQNILEDHIVSHFKNLYNTDFVHQENNLINSCVPSIVNNRSNDMLTMIPNAEEIHRAVLNLKATAAPGPDGFGGTFYHSYWNVIKNDVIDAVTQFFIQDWILPNFNANSLVLIPKVKEANTIGQFRPIALANFKFKIISKIIADRLSSILPNLISSEQKGFVLGRNIRDGICLTSEAINNLNNKGFSGNVALKIDIAKAFDTLNWTFLIHTLKAFGFHDRFCKWIHLILTSATMSIGFNGSQLGYFNCSNGLRQGDPLSPLLFCIAEDVLSRGITNLVINDKINLIKANRSHLVPSHTLFADDIMIFCRGDTKSLKAISDLLLCYGNYSGQFCNNSKSLIYAGGMTHSRHSYLADIIGFTIAVPPFIYLGVPIFVGRPKVSYFNPIADNIRLKLAAWKARSLTMAGRVQLVKSVIHSMLVHCMSIYNWPGSLIKKLERWIRNFIWSGNTDQKKIVTVAWKSCCKKINEGGLGIISISAFNSATNLQLCWKFANSNQAWSQLLNARVRKNSRLIKYSIKSSIWTGIKVYYAAVMENCIWSVGNGNTVNFWLDNWVGETLANKFKVPGQFHNSLVSKVRDWWNSEAWSINSNIQTAIPDLLSTISKFSISDLSPDLLAWKNSVNGALSLKEAYNFFLKPSPQSAWSSFPWDKDTSPSHSMIVWRYMHNKLPTDDNLAKRGFHYPSVCNLCFSAQDNALHLFFECSFAKNIWSWFCDNTQFQHGINCLEDCRIFLSLSWSKQAAAVIHASLVSFFYFVWTARNRARFEDKHTHWKSCTSLIAAHASLVGCCTSRCSNDSMLSFCLLKKFNIQIHPSKPLITKPIVWSPPLYDWFKCNVDGVSTGNARMAACGGIFRDHNANHILSFSVFLGPESAIIAEFMAAILCIEAAEKNNFRKLWVESDCIIVVNAFKDHLLVPWKIRSRWLKCLDYTLKIDFLCTHILREANFCADSLANFGLTCKDTQWFNYVIKDINRDFLLDKAELYLLRKMDHLLESPIESFGNETDSNEPRNNGSVRKENEGNEVKKAKSVDKIHKNDIDLKSSKYRGVIKSNNNRYEAFVWEHNTRKGGWGKTVYIGEFETEIEAAKAHDLFAIEKWGESTITNFPVCKYRALVVSSVRGRTSGFQSNSTWCKCVSILEFKMDEPLIDTEEKAARAYDAAAKRLIEDDAYTNFCHDNGNEDNLENKESKNTVLNQQAFVSSSSISKEQAIVMDDNDAYQHNEEYQYHKALLHQHDDIDPSSPIVLYNFIYNSFYVVGKDGIINSGDSSNQGAEDKGNVNSLQDASDDE 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi852g00014 1672 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 89 1330 - -
Vivi852g00014 1672 CDD AP2 1427 1491 IPR001471 GO:0003700|GO:0006355
Vivi852g00014 1672 Gene3D Endonuclease/exonuclease/phosphatase 1 229 IPR036691 -
Vivi852g00014 1672 SUPERFAMILY DNase I-like 1 229 IPR036691 -
Vivi852g00014 1672 MobiDBLite consensus disorder prediction 1394 1414 - -
Vivi852g00014 1672 Gene3D - 1216 1342 IPR036397 GO:0003676
Vivi852g00014 1672 MobiDBLite consensus disorder prediction 1650 1672 - -
Vivi852g00014 1672 SUPERFAMILY DNA/RNA polymerases 429 725 IPR043502 -
Vivi852g00014 1672 CDD RT_nLTR_like 495 759 - -
Vivi852g00014 1672 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 499 758 IPR000477 -
Vivi852g00014 1672 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 480 759 IPR000477 -
Vivi852g00014 1672 SUPERFAMILY Ribonuclease H-like 1215 1342 IPR012337 -
Vivi852g00014 1672 SUPERFAMILY DNA-binding domain 1427 1491 IPR016177 GO:0003677
Vivi852g00014 1672 Gene3D AP2/ERF domain 1427 1492 IPR036955 GO:0003700|GO:0006355
Vivi852g00014 1672 MobiDBLite consensus disorder prediction 1384 1414 - -
Vivi852g00014 1672 Pfam Reverse transcriptase-like 1220 1339 IPR002156 GO:0003676|GO:0004523
Vivi852g00014 1672 CDD RNase_H_like 1219 1338 IPR044730 -
Vivi852g00014 1672 Pfam zinc-binding in reverse transcriptase 1012 1095 IPR026960 -
Vivi852g00014 1672 Pfam AP2 domain 1427 1482 IPR001471 GO:0003700|GO:0006355
Vivi852g00014 1672 SMART rav1_2 1428 1496 IPR001471 GO:0003700|GO:0006355
Vivi852g00014 1672 ProSiteProfiles AP2/ERF domain profile. 1428 1490 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi852g00014 1425 1557 AP2-EREBP Transcription Factor Family AT1G51190 34.356 2.35e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi852g00014 RVT_1 2.1e-40 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi852g00014 - - vvo:131615239 1689.09