Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi852g00009 ATGGAGCAAACCACGTTCGAATCCATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCGTCGGAAACCGCCAGCTCCTTCACCGCACTTCTCGAACTTCCACCGACGCAGGTCGTCGAGCTTCTCCATTCTCCGGAACTCACCGGAAAACCACCTCGCCACGTCATTAGCCCGAAACCCTATCCCCTAACTTGTAACACGGATGATTTGATTTTCCCTTCCAACACCGCGTTGGTCGAACGCGCCGCGAGATTCTCCGTGTTCGCCGGTGAGAATTTAGCAAACTCGCCTTTGCCGGAAGTGAAAAACGAGCTACCGGAAATCGAGGAAGGTCGATGTATCTCCGATCGCACAGTTGAGAACAAGAATTCCAAACACGCTAAGAGGAAGGAGCGAGAGAAGAAGGTGAAAGTATCTTCCAAGAAAAGCAAAACCGTCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAACTTCCGTATGTGCACGTCCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGTTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTACAGGAACTGGTCCCTGGTTGCAACAAGATATCAGGAACGGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTGCAGCATGAAGTAGAGATTTTATCGATGAAACTTGCAGCAGTTAATCCAATAATTGATTTCAACCTTGACAGCATATTGGCCACTGAAGGAGTGTCTCTCATGGACAGTAACTTCCCTACCGCAGTTGCACCCGTCGTGTGGCCAGAAATCCCACATAATGGAAACAGACAGCAATTTCAGCAACCATGGCAATCTGAAGCATTCCACCAACCACTTTGGGGGAGAGAAGAAAACACCCCTAATTTCATGACCCCAGAAAACTCACTATTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCACTCAAATCAGATGAAGATGGAGCTATGA 996 0.4819 MEQTTFESIQFNEEIQGIMAPASETASSFTALLELPPTQVVELLHSPELTGKPPRHVISPKPYPLTCNTDDLIFPSNTALVERAARFSVFAGENLANSPLPEVKNELPEIEEGRCISDRTVENKNSKHAKRKEREKKVKVSSKKSKTVAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDFNLDSILATEGVSLMDSNFPTAVAPVVWPEIPHNGNRQQFQQPWQSEAFHQPLWGREENTPNFMTPENSLLSYDSSANSVSLHSNQMKMEL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi852g00009 331 FunFam transcription factor bHLH48-like isoform X1 168 240 - -
Vivi852g00009 331 SMART finulus 177 227 IPR011598 GO:0046983
Vivi852g00009 331 Gene3D - 168 239 IPR036638 GO:0046983
Vivi852g00009 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 122 315 IPR024097 GO:0006355
Vivi852g00009 331 MobiDBLite consensus disorder prediction 118 156 - -
Vivi852g00009 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 240 IPR036638 GO:0046983
Vivi852g00009 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Vivi852g00009 331 CDD bHLH_AtBPE_like 161 246 - -
Vivi852g00009 331 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi852g00009 2 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.046 1.86e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi852g00009 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi852g00009 - - vvo:131637109 635.18