Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi850g00010 ATGGTATTCAACGAGAGGCCAACCAAGAGGATGAAAAGAAGGGTCACCGCTGATCTTTACGATTTTCTCACTTTCCCTTCCGCCGGCGACTTCTCCGACGCAGTACCTTTTCGTAACCGTGTTCATCGTTTTCTATCTGATCACGCTCGTGTCGCTTTTCCTCCCTCTCTTTTTCCCTCTCTGATGACGTGGCAGATCTTGTTTCGTGTTGGGGATGATGTTGATGGCTCTGATCTTTCGTCTGCTTTGGTTACTCTTGACATTGTTGAAGAGGATGTTACTTGTTCTCGTAGTACGGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGATCATCCTGTATGTCAAAAGCGATTTCATTTCATAATAAGGTCGGGTAGTGATGCCGTCGAAGCATACCAAAGACCTTGCTCGAAATGTGGAGATCTTGTCCAATTATCTGAAGCAAGTTGCAAGTCATGTAATCTTGACATCTCTGTTGATGATCTGGAGGATTGGGTGTATCTTCAAATTGAAGATAACACGCATCTTCTGCATGGAGTTGTGCATTCCAATGGTTATGGCCACTTGCTTACTCTCAACGGAAGAGAAGGTGGCTCGATGCTTCTCTCGGGTTCTGATTTATTAGGTTTCTGGGATAGGCTCTGTGCTGCCATTGCTGTTAGGAAGGTTAGTGTGATGGACTTGTCTAAGAAGTTTGGTCTGGATTATCGTTTGCTTCATGCAATCACCAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCTGCTATGGTCTTACCAAAGAAGCATACAATAAGGCCGTTGATACCTTGTCCAAGATGCCCTTGCCCGTATTTTCATTCCATGGTCGAGGAGCCCGAAACCGTGTGCAGACTGTTATTTCACTTTACCAGTCTTTTGCAGCAACCGAACTTCTAACAATTAAAGATCTCTTGTCCTTTATGTTGAAATTGGTTCATAAATTTCGTAATCCAAGAAGTGCAAAGTCTCCACAACATGAAATCACCTGTCCATATAATATACTATGTGCATGGACAAGAAATGAGGTCGAAGACGTTCAGCAAGCTTTGATAAAGGTACTGCTTGCATCTAGTGCATGTAAGGAGGCCAAATGGGTTACAAGGCGAACTCTCAAGGGGTCCATATGTATGCGAGTTAGATCCCCAGAGCTGGTAGACTATAGTCTTAAGCACTTGCCAGGGAAATTAGCTGCAAATGGAATGGTTGTTTGTTCGCGATGCAATCCGAAATCTTGTGCTGTGGAATTCAGGTTGGGACCTTTTACTAATGTATTTACCTCAAATTCAAGCTATCCTTCAGAAGAGCAAGTGATATCTGATTTGACATTTTTATTTAATACAATTATTCGCCCTGAAAAAAAATTCAGCTACAGACCAAAGAGTATGAGGAAAACGATTGCTGATTCAGCTAGAACTGTTCTTGACTGTAAGCAGTTTATGAAGAATTATGAATCTGATCATGTGACCACAGAATCGCCTTCAGATATGAGGCTCTGGTGTCATGTGGAGCTTTCCGACCAGCCTAAAGAGGACCATCCAACACCACCCCCCGAACTAATTGTTTTGCCTATAGATGCTACTGTTGATGACCTGATGAAAGAAGTCACTAGTGCTTTTCAAGAGGTATATGCAATGTACAAGAGGTTTCAAGCTGAGGAACTTCTAGGATATGGTAAAATCAACAATTTATATACCTTGAAATTCCTTTTTGGATCAAATTCAAGTGTTAGAATCCTAGGAAAATGTCCTACCAAACATGGCCTAAGCCGATTCCGGAAGGAGCGAGGAACAGAAGAGTGGAAAGTTGATTGCACTTGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTGGCATGTGATACTTGTGGTGTCTGGCAGCATACAAGATGTGCGGGAATTGGTGGTTCCGCACCTTCCAAATTTGTATGTAGGGGATGTGTAAACTCCTATCGTGTGAAAATCCAAAGTTACTCATCTTCTAGCGAGGCTTGTAAATTGAAAACATCTTGCAGAGATGAAGCTGCTGCATCGGTTACTTGTAATATAAATGTAAATTTTGGTGTACGTTAG 2109 0.4234 MVFNERPTKRMKRRVTADLYDFLTFPSAGDFSDAVPFRNRVHRFLSDHARVAFPPSLFPSLMTWQILFRVGDDVDGSDLSSALVTLDIVEEDVTCSRSTVYCDQCRVVGWSDHPVCQKRFHFIIRSGSDAVEAYQRPCSKCGDLVQLSEASCKSCNLDISVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSMLLSGSDLLGFWDRLCAAIAVRKVSVMDLSKKFGLDYRLLHAITKGHSWYGNWGYEFGTGCYGLTKEAYNKAVDTLSKMPLPVFSFHGRGARNRVQTVISLYQSFAATELLTIKDLLSFMLKLVHKFRNPRSAKSPQHEITCPYNILCAWTRNEVEDVQQALIKVLLASSACKEAKWVTRRTLKGSICMRVRSPELVDYSLKHLPGKLAANGMVVCSRCNPKSCAVEFRLGPFTNVFTSNSSYPSEEQVISDLTFLFNTIIRPEKKFSYRPKSMRKTIADSARTVLDCKQFMKNYESDHVTTESPSDMRLWCHVELSDQPKEDHPTPPPELIVLPIDATVDDLMKEVTSAFQEVYAMYKRFQAEELLGYGKINNLYTLKFLFGSNSSVRILGKCPTKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIGGSAPSKFVCRGCVNSYRVKIQSYSSSSEACKLKTSCRDEAAASVTCNINVNFGVR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi850g00010 702 Pfam PHD-finger 617 661 IPR019787 -
Vivi850g00010 702 SUPERFAMILY FYVE/PHD zinc finger 607 663 IPR011011 -
Vivi850g00010 702 ProSitePatterns Zinc finger PHD-type signature. 617 659 IPR019786 -
Vivi850g00010 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 664 IPR013083 -
Vivi850g00010 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 672 - -
Vivi850g00010 702 SMART PHD_3 616 660 IPR001965 -
Vivi850g00010 702 CDD PHD_MMD1_like 616 659 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi850g00010 84 659 PHD Transcription Factor Family AT5G22260 27.632 4.65e-82 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi850g00010 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi850g00010 K26271 - gmx:100780558 1038.87