Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi850g00008 ATGAGTTCTTCTAACGGCGGTGTGCCGCCGGGGTTTCGATTTCATCCGACCGATGAAGAACTACTTCATTACTACTTGAAGAAGAAACTTTCCTTTCAAAAGTTTGATATGGATGTTATAAGAGAGGTGGATTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAGTGTAAGATTGGATCAACACCACAAAACGAGTGGTACTTTTTCAGTCACAAGGACAGAAAGTATCCAACAGGATCAAGAACTAATAGAGCAACAAGTGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAATGCATTAGGAATACTTTCAAGAAAATTGGAATGAGAAAGACTCTTGTGTTCTACAAAGGTAGAGCTCCTCATGGACAAAAAACTGATTGGATTATGCATGAGTATCGCCTTGAAGACGGCAATGATCCTACCAATGAAGATGGATGGGTGGTGTGTAGGGTATTCAAGAAGAAGAACTTATTCAAGATAGGAAATGATGGTGGATCCACACACAATCAAGATCAACAAATGAACAACATTTCCTCTACCAATCCCCGCTCCTTCATGCAAAGAGAAAACCAATACTTATTACATCAACAACAACATCAAAACCACCCTAGGAACCTAACTGGTTTCGAGCTCGAAAAACCCGAAATTGGTCTCCATTATCAACACTTACAAAACTCTCAATACTCACACTTCCATTCCCAACTCCAACCTCAACCTCAACCTCTTCTCCACACTCAAAAGCCTCTCGAGATGAACTTCGACTACTCATACGCAACATCTTTACCGTCGGAACAGCCTATAATAGTTAAACAGCTTATGACAAACCCTAGAGACTGTGAAAGTGGAAGTGATGGTTTGAGATACCAAGTTTCTGAATCTGGTATTGAGGTTGGTTCATGTGAACCCCATCAAGAAATTGGTGTAGGAAGAAGTGAAGGAATGAATGAATGGGGTATGCTTGATAGACTAGTGAATGAAGACTCGACAAAAGAGGCCACTAGGTTTGAAGAGGATAATCCTCATCATCAGATCAACCAGCTTTCTTTGAGGGGAGAAATGGATTTTTGGGGCTATGGAAAACAGTGA 1092 0.4093 MSSSNGGVPPGFRFHPTDEELLHYYLKKKLSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRNTFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIGNDGGSTHNQDQQMNNISSTNPRSFMQRENQYLLHQQQHQNHPRNLTGFELEKPEIGLHYQHLQNSQYSHFHSQLQPQPQPLLHTQKPLEMNFDYSYATSLPSEQPIIVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPHQEIGVGRSEGMNEWGMLDRLVNEDSTKEATRFEEDNPHHQINQLSLRGEMDFWGYGKQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi850g00008 363 FunFam NAC domain-containing protein 17 160 - -
Vivi850g00008 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 224 - -
Vivi850g00008 363 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Vivi850g00008 363 ProSiteProfiles NAC domain profile. 8 156 IPR003441 GO:0003677|GO:0006355
Vivi850g00008 363 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Vivi850g00008 363 SUPERFAMILY NAC domain 7 156 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi850g00008 1 359 NAC Transcription Factor Family AT1G33280 55.285 3.91e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi850g00008 NAM 4.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi850g00008 - - gmx:100804181 580.482