Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi850g00006 ATGAATGCTCTCAATTCTCGTTCAAATAAAGATTTCATGCCAACCGATGATGAACTTCTTCAAAAGTTTCTCTACAACAAAATTAACAACAACCCAATTCCCGATTATCTCAACATTCTCGAATATGATTTATTCGGTACTAACCAAAATCCGTTGGATATATGGAATGAATTTGAAGCTTCGTACTCATATGGTGGAAAAGACCTATATTTCTTTACTACCTTAAAGAAAAAATCTGCTACAAGCACACGCTCCGTTCGCACTATTGGCAATGGTAATTGGGAAGGTGAAGACACCGGAAAAAATATATTTGCCAAAGACACGAACCAACTCCTCGGTTTGAAAAAACGTTTTCGTTTTGAGAAGAGTAACACTCCTCAAGATGGTGGATGGATCTTGCACGAATATAACCTTGACAAATCTTTGATTAACAATACTCCGGTCAACAATTATGTTTTATGCAGATTTAGAAAGAATTTGAAATCTGAATCACAAAATACACATGCAAAAGCAAGTATAGCTGATAAATCAAATTCTCATTTAAGAAAAATTTCAAGAACAAACAATTGTTGCGCGAAAGAGAGTAAAGAAAAAACTATGATTCCTAAAGAAAGACAACCTATCATCCCTAAACAACAAGAACCTGGCACTCCTAAACAAGTTGAATCGGTCATATCAGAAAATAATGTTTTGGTGAAAAAATATATTATCTATGAAGAAGCAATAACTCAATTAAATGATGGAGACAAGAGGATGTACGAGGATGACATAAAGTTTGTATATAATGCAGAAAAAAGAAAATGCATAAGTACATGGCTAGAAGAGAAAAGATTTTCTGAATTAAGATTTCTTGGAGAAAATATTGCACAAAATCCAAAAAATCAAGTTGATAGGAGAAATAGCAAAACTAAGGTGGTTGAAAGAACTAAGCAAATAGAGTGCAATTTTAACAAAGAAGATGACAATAATATCATCATGAATAAAGAAGAAGGAGAAGAAGAAGAGGAATATGATAATGATGAGATGTCTTGGCCTGAATTATTTGCAAACAATCTGTTGGAAATTAATGAAGGAGAAGAGTTCATAAAAGAAGATGATATTGAAATGCTTAACAATAGTTCTCATAAGAATTTTTTTGTTGGAAAATAA 1149 0.3229 MNALNSRSNKDFMPTDDELLQKFLYNKINNNPIPDYLNILEYDLFGTNQNPLDIWNEFEASYSYGGKDLYFFTTLKKKSATSTRSVRTIGNGNWEGEDTGKNIFAKDTNQLLGLKKRFRFEKSNTPQDGGWILHEYNLDKSLINNTPVNNYVLCRFRKNLKSESQNTHAKASIADKSNSHLRKISRTNNCCAKESKEKTMIPKERQPIIPKQQEPGTPKQVESVISENNVLVKKYIIYEEAITQLNDGDKRMYEDDIKFVYNAEKRKCISTWLEEKRFSELRFLGENIAQNPKNQVDRRNSKTKVVERTKQIECNFNKEDDNNIIMNKEEGEEEEEYDNDEMSWPELFANNLLEINEGEEFIKEDDIEMLNNSSHKNFFVGK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi850g00006 382 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vivi850g00006 382 PANTHER NAC TRANSCRIPTION FACTOR 56 12 197 - -
Vivi850g00006 382 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Vivi850g00006 382 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Vivi850g00006 382 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi850g00006 12 156 NAC Transcription Factor Family AT5G13180 34.459 1.53e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi850g00006 NAM 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi850g00006 - - psat:127093644 546.969