Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi84g00017 ATGTCTCAATCCAAATGTGATGAAGTTGATAAAATGTTAGATGCTTATATCTACGATTACCTCGTGAAGCAACAATTGTATGAAACTGCGAGAATTTTTCACGATGAAGCCGAGGTTGTACCCGATGTTGTTAGGTATGCACCTGATGATTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGAGTTATTTATGGCTAAGAGAGGTCTGTCACAATCAGAACCAGCAGTGTCTTATCTTAAGGGAATGCGGAAGCAAGAAGAGAAAAGGAGAATCCTGTTTGTGTCACGGAGACCTGCTCAGCAGCAGAAATATGGGGCTGAAACTCAAGTTGTTAATGACAATGTTCTCTGTTCCATAAACAATGGTCGTAGGCAGAACTGGGTAACTTCTAATGCAACAAAACGAAATAGGGACATGCTGAAGCCTCCCCTCCATGGAAATGCTTTAGATGAAATGAGAATTAAGAAAATGAAAACTAATAACACTGGTCAGCTTCCGATCGAGCATTGTGCCTTGTTTAACGCTGTAGCTGCAATGTCTGCCAGACAGACTTCAAGACAAACATTCCGCAGTGCATTTAGCATTTTAAAAGAGAATCTTCAACAAGACGAAAATCAGAACCAGCAACTTCCAGGGTCTATACAAGGCATGACCAGTAATAAGAATCCAATGATGGGGTTCCGCACATTTATCCATATTAATCATGGTGGGAGCAATTTAACTCGGAAAAGGCGGCCTTTAGCAGAGCTGGATCAGCTTCACTCAGAACTTCTCCAGGAGGATAATTTGATGCTGTCTTCACAATCTTCCAATCAATTTTCACCACAGCAGCAACTTATGCTTCAGGCACAACAGGATTTAGTTAATCCGTTTCTCTGTGGTTTTGTTGGCAAAAGACCAAGGGTGCTTCTAAATAATCAAAATATTGTTCCAGGGAAAGATGGCCAATCAAATTATTTTGGTGATTCAATTCCCAATATTGTAACACCTGCACCAATTGGTTTCTCTGAATTGCCTTATCTTGTCAATATCTTTGGAACTGCAAACACAACAAGACAATCTTTTGGTTCACCTTCTCCACCATCAATGCAGACACCACTGCCAACTTGGCAACAGAATGATTTGAGCTCACCTGTGTCAACACAGACTCAATGGGATAATATGGATCATCACAAGAGTGATGTGTCTGTGGGTGACAATTTTGAGGCATTATCATGCTTCGCTGATGCAGACCAAAAAGGAGAAGTTGACAACGGATTCTCATTTAAGGAGATCAAGCATGGAATGGCTAGTTCACATAAAGTTAGTTGCTGCCACTTCTCCTTGGATGGAAAACTACTTGTTACGGGTGGTCATGATAACAAGGCTTCTCTTTGGTGCACAGAATCGTTTAACCTGAAATCTACTCTTCACGGGCACTCGAAATGGATAACTGATGTTAGATTTTCCCCAAGCATGTTGTGTGTTGCTACGTCCTCAGCTGACAAAACTGTAAAGGTTTGGGGTGTTAACAATCCTAGTCATTCTATTCGGACATTTACAGGGCATACAAGAACTGTGATGTCACTAGACTTTCACCCAAAAAATGATGACCTTATTTGCTCTTGTGATCAAATGGAGATAAGATATTGGAGTATTGAAAATGGTAGTTGTGTTGGGGTTTTCAAGGGTGGTGCAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCAGCAGTAAATAATCTAATACTCATTCTTGATGCAGAAACTCTGTGTTGCAGAATTAAATTGCTGGGCCACAATAGCATTGTTCATTCGGTGTGCTGGCACTCGTCTGGAAAATATCTGGCCTCTGTCAGTGATGATCTCGTGAGAATCTGGGACATTGGTGCCAATGTCAGTGGGGTGTATATTCATGAACTGGATACAGCTGGGTCTGATGACAAAATCAAGAGCTGTGTTTTTCATCCCATTTATCATGTTCTGATCCTTGGCCGCGACGAGACTCTTATGCTGTGGGATTATATAAAGAGAAATGTAATGTTTCTGCGTGGACACGACGAGCTTGTATCTGCCTTGGCAGTATCCAAAGTTACTGGATTGGTGGCTTCAGTTAGTCATGACAAACATTTCAAAATCTGGATGTGA 2139 0.4147 MSQSKCDEVDKMLDAYIYDYLVKQQLYETARIFHDEAEVVPDVVRYAPDDFLFEWWSVFWELFMAKRGLSQSEPAVSYLKGMRKQEEKRRILFVSRRPAQQQKYGAETQVVNDNVLCSINNGRRQNWVTSNATKRNRDMLKPPLHGNALDEMRIKKMKTNNTGQLPIEHCALFNAVAAMSARQTSRQTFRSAFSILKENLQQDENQNQQLPGSIQGMTSNKNPMMGFRTFIHINHGGSNLTRKRRPLAELDQLHSELLQEDNLMLSSQSSNQFSPQQQLMLQAQQDLVNPFLCGFVGKRPRVLLNNQNIVPGKDGQSNYFGDSIPNIVTPAPIGFSELPYLVNIFGTANTTRQSFGSPSPPSMQTPLPTWQQNDLSSPVSTQTQWDNMDHHKSDVSVGDNFEALSCFADADQKGEVDNGFSFKEIKHGMASSHKVSCCHFSLDGKLLVTGGHDNKASLWCTESFNLKSTLHGHSKWITDVRFSPSMLCVATSSADKTVKVWGVNNPSHSIRTFTGHTRTVMSLDFHPKNDDLICSCDQMEIRYWSIENGSCVGVFKGGATQVRFQPGLGKLLAAAVNNLILILDAETLCCRIKLLGHNSIVHSVCWHSSGKYLASVSDDLVRIWDIGANVSGVYIHELDTAGSDDKIKSCVFHPIYHVLILGRDETLMLWDYIKRNVMFLRGHDELVSALAVSKVTGLVASVSHDKHFKIWM 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi84g00017 712 Pfam WD domain, G-beta repeat 432 459 IPR001680 GO:0005515
Vivi84g00017 712 Pfam WD domain, G-beta repeat 466 501 IPR001680 GO:0005515
Vivi84g00017 712 Pfam WD domain, G-beta repeat 510 544 IPR001680 GO:0005515
Vivi84g00017 712 Pfam WD domain, G-beta repeat 676 711 IPR001680 GO:0005515
Vivi84g00017 712 Pfam WD domain, G-beta repeat 590 625 IPR001680 GO:0005515
Vivi84g00017 712 Pfam LisH 11 37 IPR006594 GO:0005515
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 626 IPR001680 GO:0005515
Vivi84g00017 712 CDD WD40 432 711 - -
Vivi84g00017 712 Gene3D - 379 562 IPR015943 GO:0005515
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 513 550 - -
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 505 - -
Vivi84g00017 712 SMART WD40_4 506 545 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 631 671 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 463 502 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 421 460 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 548 584 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 587 625 IPR001680 GO:0005515
Vivi84g00017 712 SMART WD40_4 673 712 IPR001680 GO:0005515
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 680 712 - -
Vivi84g00017 712 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 711 IPR044716 GO:0003714
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 511 IPR001680 GO:0005515
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 554 IPR001680 GO:0005515
Vivi84g00017 712 ProSiteProfiles Trp-Asp (WD) repeats profile. 680 712 IPR001680 GO:0005515
Vivi84g00017 712 Gene3D - 563 712 IPR015943 GO:0005515
Vivi84g00017 712 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Vivi84g00017 712 SUPERFAMILY WD40 repeat-like 421 711 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi84g00017 429 674 Miscellaneous Gene Families AT5G08390 26.667 3.20e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi84g00017 WD40 0.045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi84g00017 - - vvo:131634127 1382.47