Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi84g00016 ATGTCTCAATCCAAATGTGATGAAGTTGATAAAATGTTAGATGCTTATATCTACGATTACCTCGTGAAGCAACAATTGTATGAAACTGCGAGAATTTTTCACGATGAAGCCGAGGTTGTACCCGATGTTGTTAGGTATGCACCTGATGATTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGAGTTATTTATGGCTAAGAGAGGTCTGTCACAATCAGAACCAGCAGTGTCTTATCTTAAGGCTCAGGGAATGCGGAAGCAAGAAGAGAAAAGGAGAATCCTGTTTGTGTCACGGAGACCTGCTCAGCAGCAGAAATATGGGGCTGAAACTCAAGTTGTTAATGACAATGTTCTCTGTTCCATAAACAATGGTCGTAGGCAGAACTGGGTAACTTCTAATGCAACAAAACGAAATAGGGACATGCTGAAGCCTCCCCTCCATGGAAATGCTTTAGATGAAATGAGAATTAAGAAAATGAAAACTAATAACACTGGTCAGCTTCCGATCGAGCATTGTGCCTTGTTTAACGCTGTAGCTGCAATGTCTGCCAGACAGACTTCAAGACAAACATTCCGCAGTGCATTTAGCATTTTAAAAGAGAATCTTCAACAAGACGAAAATCAGAACCAGCAACTTCCAGGGTCTATACAAGGCATGACCAGTAATAAGAATCCAATGATGGGGTTCCGCACATTTATCCATATTAATCATGGTGGGAGCAATTTAACTCGGAAAAGGCGGCCTTTAGCAGAGCTGGATCAGCTTCACTCAGAACTTCTCCAGGAGGATAATTTGATGCTGTCTTCACAATCTTCCAATCAATTTTCACCACAGCAGCAACTTATGCTTCAGGCACAACAGGATTTAGTTAATCCGTTTCTCTGTGGTTTTGTTGGCAAAAGACCAAGGGTGCTTCTAAATAATCAAAATATTGTTCCAGGGAAAGATGGCCAATCAAATTATTTTGGTGATTCAATTCCCAATATTGTAACACCTGCACCAATTGGTTTCTCTGAATTGCCTTATCTTGTCAATATCTTTGGAACTGCAAACACAACAAGACAATCTTTTGGTTCACCTTCTCCACCATCAATGCAGACACCACTGCCAACTTGGCAACAGAATGATTTGAGCTCACCTGTGTCAACACAGACTCAATGGGATAATATGGATCATCACAAGAGTGATGTGTCTGTGGGTGACAATTTTGAGGCATTATCATGCTTCGCTGATGCAGACCAAAAAGGAGAAGTTGACAACGGATTCTCATTTAAGGAGATCAAGCATGGAATGGCTAGTTCACATAAAGTTAGTTGCTGCCACTTCTCCTTGGATGGAAAACTACTTGTTACGGGTGGTCATGATAACAAGGCTTCTCTTTGGTGCACAGAATCGTTTAACCTGAAATCTACTCTTCACGGGCACTCGAAATGGATAACTGATGTTAGATTTTCCCCAAGCATGTTGTGTGTTGCTACGTCCTCAGCTGACAAAACTGTAAAGGTTTGGGGTGTTAACAATCCTAGTCATTCTATTCGGACATTTACAGGGCATACAAGAACTGTGATGTCACTAGACTTTCACCCAAAAAATGATGACCTTATTTGCTCTTGTGATCAAATGGAGATAAGATATTGGAGTATTGAAAATGGTAGTTGTGTTGGGGTTTTCAAGGGTGGTGCAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCAGCAGTAAATAATCTAATACTCATTCTTGATGCAGAAACTCTGTGTTGCAGAATTAAATTGCTGGGCCACAATAGCATTGTTCATTCGGTGTGCTGGCACTCGTCTGGAAAATATCTGGCCTCTGTCAGTGATGATCTCGTGAGAATCTGGGACATTGGTGCCAATGTCAGTGGGGTGTATATTCATGAACTGGATACAGCTGGGTCTGATGACAAAATCAAGAGCTGTGTTTTTCATCCCATTTATCATGTTCTGATCCTTGGCCGCGACGAGACTCTTATGCTGTGGGATTATATAAAGAGAAATGTAATGTTTCTGCGTGGACACGACGAGCTTGTATCTGCCTTGGCAGTATCCAAAGTTACTGGATTGGTGGCTTCAGTTAGTCATGACAAACATTTCAAAATCTGGATGTGA 2145 0.4154 MSQSKCDEVDKMLDAYIYDYLVKQQLYETARIFHDEAEVVPDVVRYAPDDFLFEWWSVFWELFMAKRGLSQSEPAVSYLKAQGMRKQEEKRRILFVSRRPAQQQKYGAETQVVNDNVLCSINNGRRQNWVTSNATKRNRDMLKPPLHGNALDEMRIKKMKTNNTGQLPIEHCALFNAVAAMSARQTSRQTFRSAFSILKENLQQDENQNQQLPGSIQGMTSNKNPMMGFRTFIHINHGGSNLTRKRRPLAELDQLHSELLQEDNLMLSSQSSNQFSPQQQLMLQAQQDLVNPFLCGFVGKRPRVLLNNQNIVPGKDGQSNYFGDSIPNIVTPAPIGFSELPYLVNIFGTANTTRQSFGSPSPPSMQTPLPTWQQNDLSSPVSTQTQWDNMDHHKSDVSVGDNFEALSCFADADQKGEVDNGFSFKEIKHGMASSHKVSCCHFSLDGKLLVTGGHDNKASLWCTESFNLKSTLHGHSKWITDVRFSPSMLCVATSSADKTVKVWGVNNPSHSIRTFTGHTRTVMSLDFHPKNDDLICSCDQMEIRYWSIENGSCVGVFKGGATQVRFQPGLGKLLAAAVNNLILILDAETLCCRIKLLGHNSIVHSVCWHSSGKYLASVSDDLVRIWDIGANVSGVYIHELDTAGSDDKIKSCVFHPIYHVLILGRDETLMLWDYIKRNVMFLRGHDELVSALAVSKVTGLVASVSHDKHFKIWM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 507 - -
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 714 - -
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 556 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 589 627 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 675 714 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 423 462 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 633 673 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 465 504 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 550 586 IPR001680 GO:0005515
Vivi84g00016 714 SMART WD40_4 508 547 IPR001680 GO:0005515
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 628 IPR001680 GO:0005515
Vivi84g00016 714 SUPERFAMILY WD40 repeat-like 423 713 IPR036322 GO:0005515
Vivi84g00016 714 Gene3D - 381 564 IPR015943 GO:0005515
Vivi84g00016 714 CDD WD40 434 713 - -
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 552 - -
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 513 IPR001680 GO:0005515
Vivi84g00016 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 714 IPR001680 GO:0005515
Vivi84g00016 714 Pfam WD domain, G-beta repeat 678 713 IPR001680 GO:0005515
Vivi84g00016 714 Pfam WD domain, G-beta repeat 512 546 IPR001680 GO:0005515
Vivi84g00016 714 Pfam WD domain, G-beta repeat 592 627 IPR001680 GO:0005515
Vivi84g00016 714 Pfam WD domain, G-beta repeat 434 461 IPR001680 GO:0005515
Vivi84g00016 714 Pfam WD domain, G-beta repeat 468 503 IPR001680 GO:0005515
Vivi84g00016 714 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 713 IPR044716 GO:0003714
Vivi84g00016 714 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Vivi84g00016 714 Gene3D - 565 714 IPR015943 GO:0005515
Vivi84g00016 714 Pfam LisH 11 37 IPR006594 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi84g00016 431 676 Miscellaneous Gene Families AT5G08390 26.667 3.34e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi84g00016 WD40 0.045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi84g00016 - - vvo:131634127 1390.94