Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi84g00013 ATGGCATCACCGTCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTATTGAAATCAGTTGGTGAACAAAGTGATCAAACCTACAAACTCGAAGAGTTTGTTTCTCGTTTGGAAGAAGAACGTCTCAAGATTGATGCGTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCGATGGAGGCATCGAAGCAGCAACTTCAAGCTTACAAAGTGAGTCAAGGAGTTACAAAGCCGATTCTCGAAGAATTCATACCGGTAAAGGAAGTAACATCTTCAGAAACCATGGAAAATATAACTAATAATAATGTATGTGATAAGGCGAACTGGATGACAAGTGCTCAACTATGGAGTCAAACAACTGAAGCAACAAAACAACAAAATTCCGCGAAAGAAACTCCTGAAAGCAACAATATTGGATTCAACATTAGTCCTAAACATAGAAACGGTGGTGGAGCTTTTTTACCGTTCTCAAAAGAAAGAAACAACTCATCATCATGCCAAAATCAAGGTCTTCCTGAACTAGCACTTGCCTCTAACCAGAAAGAGGTTGAGGATAAGAAACATGAAGAAAAAGGAGAGAAGAGAGAAAACACCGAAGAGAAAGGAAGTCCAGTAGCATCATCACATACTCAAACAACAAGCAACAATTCAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCTGACTTGCACCGCAGATTCGTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGAAGGTGGATGGATTGACCAATGATGAAGTGAAAAGCCATTTGCAGAAATATAGGCTACACACAAGAAGGCCTAGCCTAAGTGCACAACCAGGTGCACCACCAGCACAGCTGGTTGTTTTAGGAGGAATATGGGTCCCACCGGAATATGCCACCGCGCATTCAGGCGGAGCAACTACTCTCTACGGTGGACATCCTACTTCTCATCATATGACTCTGCCACACTACTGCACTGCACCTGGTCAGGAGTATTACACTACTGCACCTCCGCAGCAGCTACTTCCGCCGCCGCATCATATGCACCATGTTTACAAGGCGACCCCGCACGGTCAGGGCTCGCCGGAGACAGGTGGAGATGGGTTGGAGAGTATTGAGAATGGGAAGTCTGAAAGTGGGAGCTGGAAAGAAGGGAGTTCTGAGAATGAAGGAGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGAGATCACTCTCAAATTTTAA 1275 0.4471 MASPSELGLDCKPHSYSMLLKSVGEQSDQTYKLEEFVSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAYKVSQGVTKPILEEFIPVKEVTSSETMENITNNNVCDKANWMTSAQLWSQTTEATKQQNSAKETPESNNIGFNISPKHRNGGGAFLPFSKERNNSSSCQNQGLPELALASNQKEVEDKKHEEKGEKRENTEEKGSPVASSHTQTTSNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSLSAQPGAPPAQLVVLGGIWVPPEYATAHSGGATTLYGGHPTSHHMTLPHYCTAPGQEYYTTAPPQQLLPPPHHMHHVYKATPHGQGSPETGGDGLESIENGKSESGSWKEGSSENEGERKGFVEESNGSEITLKF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi84g00013 424 Gene3D - 228 286 - -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 123 231 - -
Vivi84g00013 424 Coils Coil 33 53 - -
Vivi84g00013 424 Pfam Myb-like DNA-binding domain 231 282 IPR001005 -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 185 208 - -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 356 424 - -
Vivi84g00013 424 Coils Coil 424 424 - -
Vivi84g00013 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 286 IPR017930 -
Vivi84g00013 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 398 IPR044787 GO:0003700|GO:0006355
Vivi84g00013 424 FunFam Myb family transcription factor 228 286 - -
Vivi84g00013 424 SUPERFAMILY Homeodomain-like 226 287 IPR009057 -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 163 181 - -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 398 414 - -
Vivi84g00013 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 229 284 IPR006447 GO:0003677
Vivi84g00013 424 MobiDBLite consensus disorder prediction 123 149 - -
Vivi84g00013 424 MobiDBLite consensus disorder prediction 209 229 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi84g00013 1 424 G2-like Transcription Factor Family AT2G03500 49.266 2.39e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi84g00013 Myb_DNA-binding 8.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi84g00013 - - tpra:123921036 683.715