Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi84g00011 ATGACGCTGGACGATGATAGCTCCATATACGTTGGAGGTCTTCCCTACGACGCCAACGAAGATACAATTCGCACTGTCTTCAATTTGTATGGCGCTATCCTTGATGTCAAGATTATCAATGACCAACGTACAGTAGGCAAATGCTACTGTTTTGTTACTTTCACAACCCCTAGGTCAGCAATTGATGCCATCAACGACATGAATGGAAGAAGTATTAGTGGGCGTGTGGTCAAAGTTAATGGGGTCAAGTCTCGCGGTGGTGGTGGTGGCGGCGGTGGTAGGTCAAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGTGATTGGGATCGTGGTCGAGATAGAGAGATTCGAGACCAAGATTATGATCGTGGCAGTGGCAGAGATCATATTCGAGAGCAAAATTATGATCATGGTAATGAGAAAGATGGATACAGGAGTAGAGGCGGTGATTGGAGTCGACATGGTGATAGGTCTCGAGACCGTGATAGGTCTCGGGATCGTGATAGGTCCCGAGACCATGAGAGGGGTAGGGATAGGAGAGTTGAACATGTGCAAGATTATGATGATCAAGGTAGAGAAAGCATGTTGGATGATGATTGGAATCGTGATGATGATAGGGCTGAGAATCAGCAAGAAAACAGCAGGGTACATGGTGGAGATGTGGATAGAGAGCATAACTTGGATGTGGATATCGAGAGAAAGATGGATAGGGTTAGTGATCCTGATAAAAGTTTTGATGAACCTAAAAGAGAGCCGCCAAGGAGAAACATAGATTTGAATGTGACAAATGAAAATAGTCCATCAGATTCTACTGATGACCACAATGATGAGGCAGAAGATGAGTTAGAGCAGTCAATGCAAGAACTTGATAAACTAAAAAAGGAGGTTTCTAAGCTGGAAGAGAGAGTGGAAGAAAGAAGAGTTAATGTTACGGAGTTGCAAAAACACTCTAAGAAACTAGAGGATGCGGTGATTTCTGCAAAGAAACAATCTCTATATCGCCAGATGCAGTTGACCAAGCTGCATGAGTGTTATCTTCAAGTGCAAGATTCCACAGAGAGACTTAAAACCAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCGGTAATGTTTGAGAGTGATGGTGATGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAAATAG 1191 0.4282 MTLDDDSSIYVGGLPYDANEDTIRTVFNLYGAILDVKIINDQRTVGKCYCFVTFTTPRSAIDAINDMNGRSISGRVVKVNGVKSRGGGGGGGGRSNFGRERERYYHHNDERNGDWDRGRDREIRDQDYDRGSGRDHIREQNYDHGNEKDGYRSRGGDWSRHGDRSRDRDRSRDRDRSRDHERGRDRRVEHVQDYDDQGRESMLDDDWNRDDDRAENQQENSRVHGGDVDREHNLDVDIERKMDRVSDPDKSFDEPKREPPRRNIDLNVTNENSPSDSTDDHNDEAEDELEQSMQELDKLKKEVSKLEERVEERRVNVTELQKHSKKLEDAVISAKKQSLYRQMQLTKLHECYLQVQDSTERLKTSEKEFQALVDSVMFESDGDGLGQLTNGSLDGK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi84g00011 396 MobiDBLite consensus disorder prediction 96 264 - -
Vivi84g00011 396 MobiDBLite consensus disorder prediction 80 290 - -
Vivi84g00011 396 CDD RRM_SF 9 80 - -
Vivi84g00011 396 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Vivi84g00011 396 PANTHER GEO13361P1-RELATED 7 177 - -
Vivi84g00011 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vivi84g00011 396 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vivi84g00011 396 Gene3D - 2 99 IPR012677 -
Vivi84g00011 396 Coils Coil 275 337 - -
Vivi84g00011 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi84g00011 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 5.68e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi84g00011 - - psat:127073620 610.527