Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi848g00007 ATGAGAATGACCCCTTCAATTATCTTCATCATAGTAATTTTAGCTATTGTGTTTTTCATCTCTGGTGTCCTCCAACTGTTTGTTAGATTTCTCATACGAAAAAGATCTTCTTTAAGAGCTTCACAGTCCAGTAATAATGGCAACCCTCAAATGTCTGAACCTGATCCTTATCAGAGACAGTTGCAACAGCTCTTCAATCTTCATGATTCGGGTTTAGATCAAGCTTTCATTGATGCTCTACCGGTTTTTATGTACAAGGAGATAATAGGTTTGAAAGAGGTGTTTGATTGTGCTGTTTGTCTTTGTCAGTTCACTGAGCAAGATATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCATATTGATTGCATAGATACATGGCTTCTTTCTAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGATTTGCTTTCGAAAATCCGGTTTATGATGAATTCGAGAGCCTTAGTGAAGAGAATATGGTTGTTGGTGAGGGTAACTCTGTTAACAAACATGCAGAGAATCATATAATGAGTGGGAAAAGGGTTTTTTCTGTTAGGCTTGGGAAATTTAGAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAAGGGTGAAGGAGAGTGTAGTAGTGAAAGTGTTGTTGGTGATGTTAGGAGATGCTTTTCAATGGGTTCTTACCAATATGTAGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGTCCAAAGAGAGGTGAAGGAAGAGGAAAGAGTGCTAGTATGAGACAATTGAAAGGAGGGCTTGCTCAAAATGGGAATTGTTCCATTGATGTGGATGTTGTTGAAGGGAAAAAGATGAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATTTGGTTGTGGTCTAGGAAGGATAAGGTATCAAGTTCATCACAATCCCATTTGGTTAATTCTAATGTCACTTCAACTTTGCCATGGATGAATAGAGAACTCAAGGAAGCAACTTAG 1002 0.3812 MRMTPSIIFIIVILAIVFFISGVLQLFVRFLIRKRSSLRASQSSNNGNPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFMYKEIIGLKEVFDCAVCLCQFTEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFAFENPVYDEFESLSEENMVVGEGNSVNKHAENHIMSGKRVFSVRLGKFRSSNNGEGGVEKGEGECSSESVVGDVRRCFSMGSYQYVVADSDLVVALCPKRGEGRGKSASMRQLKGGLAQNGNCSIDVDVVEGKKMNVARKGESFSISKIWLWSRKDKVSSSSQSHLVNSNVTSTLPWMNRELKEAT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi848g00007 333 SUPERFAMILY RING/U-box 76 145 - -
Vivi848g00007 333 CDD RING-H2_EL5-like 96 139 - -
Vivi848g00007 333 FunFam RING-H2 finger protein ATL46 59 144 - -
Vivi848g00007 333 Pfam Ring finger domain 96 139 IPR001841 -
Vivi848g00007 333 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vivi848g00007 333 SMART ring_2 97 138 IPR001841 -
Vivi848g00007 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Vivi848g00007 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 297 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi848g00007 2 309 C3H Transcription Factor Family AT2G18650 40.950 9.79e-59 193