Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi848g00003 ATGATGAAGAGACAAAGAGAAAAAGAGAGCATGGAACACCAAAAGAACAAAACATATTTTCAAGATCAGTTTGAGTGCAAAACATGCAACCGAAAATTCTCATCTTTTCAAGCACTTGGTGGTCACAGGACAAGTCACAAGAAACTCAAACTTGAAGGAGATGAAACAGTACTCAAAGGGTATGATCATACAAATAAGCAACCAAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACATATGAGAAGGCATAGAATTAATAATGAAGGGTTTTCCTTATCTTGTATGAATTATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAAAGTAAAAGGGTGATGTGTTTAGAATTGGACTTGAATTTGACACCTTTAGAAAATGACTTGAAGTTCTTGTTTGGAAATAAGGCGCCTCAAGTAGATCACTCTTTATTTTGA 480 0.3458 MMKRQREKESMEHQKNKTYFQDQFECKTCNRKFSSFQALGGHRTSHKKLKLEGDETVLKGYDHTNKQPKMHKCSICGQEFKLGQALGGHMRRHRINNEGFSLSCMNYQVIAKSSPVLKRSNSKSKRVMCLELDLNLTPLENDLKFLFGNKAPQVDHSLF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi848g00003 159 SUPERFAMILY beta-beta-alpha zinc fingers 23 93 IPR036236 -
Vivi848g00003 159 SMART c2h2final6 24 46 IPR013087 -
Vivi848g00003 159 SMART c2h2final6 71 93 IPR013087 -
Vivi848g00003 159 Gene3D Classic Zinc Finger 23 93 - -
Vivi848g00003 159 PANTHER ZINC FINGER PROTEIN ZAT5 12 142 - -
Vivi848g00003 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Vivi848g00003 159 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Vivi848g00003 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Vivi848g00003 159 Pfam C2H2-type zinc finger 71 94 - -
Vivi848g00003 159 Pfam C2H2-type zinc finger 24 48 - -
Vivi848g00003 159 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi848g00003 14 155 C2H2 Transcription Factor Family AT2G37430 52.448 6.68e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi848g00003 zf-C2H2_6 3.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi848g00003 - - cam:101495964 210.305