Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi842g00001 ATGGTAGAAGGAGGAAGAATGCGATTATCCGAGGAAGCTAGAAATGGGTTAGAATTTTTGAAACGTAAGAGGCTTCAGCGTGCACAAGCCGCCGCTGCCTCTCAGACTAATGTTGCTAACATGATGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTTCATGTGGCACAAGACTGCACAGTGATCCAGATGTTTTTTTCAAACGGAAGGTGGATAAGTTTGATACAAGTGATTTGGAATGGACTGAGAACATTCCAGAGTGTCCTGTGTATTCTCCGACAAAGGAGGAATTTGAAGATCCTTTGATTTACTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCACCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAAGAGAAAGCAGGATTTAAGTTTACAACTAGAGTACAGCCTCTTCGCCTTGCTGAGTGGGACACTGAAGACAAAGTCACCTTTTTTATGAGTGGAAGAAATTATACATTCCGCGATTATGAGAAAATGGCAAACAAGGTTTTCGCACGAAGATATTGCAGCTCTGGATGTCTTCCAGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGACACTGTTGAATATGCATGTGATGTTGATGGTAGTGCATTTTCATCTTCTCCTACTGATCAGCTTGGGAATAGCAAATGGAATTTAAAGAATCTTTCCCGTTTGCCCAAATCAACTTTGCGTCTCTTGGAAACTTCAATTCCGGGAGTAACAGAACCTATGCTATACATTGGAATGCTGTTTAGTATGTTTGCGTGGCACGTGGAGGATCATTATTTGTACAGCATTAATTACCAGCATTGTGGTGCATCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTACTGATATTTTGTCAAGTGACGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTTTATTTCCGCCTAATATTTTGTTGGAACATAAAGTCCCTGTCTATAAAGCTGTTCAAAAGCCAGGAGAGTTTGTCATAACCTTTCCTAGAGCATATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCTCTTGATGATTGGTTTCCTCTTGGGGCTATTGCGAGCCGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCAATGCTTATTCATTCAAGCGTGGAACTTGAAGATTCGGACTTTCCTTCCCCAGACTTGTTATCTCCTAATAAAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAGCACTGTGCCAGTTGGTTACTTATGAAATCAAGGGCGTGTACTAGTGTTTCTTCACATTCGCATGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTACATTGCTTATGTTGGCTGCAGCTGTCACATGCACCCTGTATGCCTACGTCATGAGGTTAAATCTCTTGACTTCAGCTGTGGGAAGAAGCACACTCTATATTTGAGAGAGGATATTGGGGACATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAGGCAAGCAATCCAAAAGCGAACAAAATATGTATTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAACAAGTGGATATGAACCATATTGTGAGCTTAAATTTGATTCTATGATGGAGTTTTATACAGCTCCAGAACTGTCAACAAATAATCAAGAGTGCGGCACACAAAGTCAATTTGTATCAGACTCAGAAAACCATAAACCAGAAGTGTCTGAGGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACATCTTGAGTGTTCCTCTGCTAATAAAGATGCCGAGGTGCAGACTAACTTGAAAGTGGGCATTATTGATTGCAAAGAACTTGGTGAAGCAATATCCAACAATGCATGCGGATCTTCACTATTCCCTTCTCGGCATCATGAAAGTTCGCTTAAAGTGCATGATCTTCAGAAAGCCGATGTGAAGCCTATAGTGGATAATGACAGTGATGATTCTGATTCAGGAATATTTAGGGCAAAGCGCCCCGCTTCTCTAAAGGCTGAGAAAAGAAATTTGAAGGCTGTGGCGGTGAAACATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAACAGGCAACAAATGAATGTCAGAACCAGTGAATCAAGTTATAAATATAACCCAGTTAGTCATAAAGTTGATATTGGAATTTCCTTTAAGGACAGATTTGCAAGGGGAAATGACACTCCCATTCCTGTAAGATATAAAAAGTCAGGCAATGAGGAAGTAAGTATGAACATGCAACAAAATCACCACAGGAAAGAGAGGTTTCAGCAAACTTATAGAGAAGCGCCATCCATTGAGATTGGGTCTAAGCGACTTAAAGTCCGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGGTTGAATTGA 2565 0.4129 MVEGGRMRLSEEARNGLEFLKRKRLQRAQAAAASQTNVANMMNRSGGDALRASASCGTRLHSDPDVFFKRKVDKFDTSDLEWTENIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSSGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKNLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALDDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSSVELEDSDFPSPDLLSPNKTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVGCSCHMHPVCLRHEVKSLDFSCGKKHTLYLREDIGDMEAAAKMFEQEDGILDEIGKQSKSEQNMYSYPLSDMFQRAETSGYEPYCELKFDSMMEFYTAPELSTNNQECGTQSQFVSDSENHKPEVSEVSFSAASTLCSLSEHLECSSANKDAEVQTNLKVGIIDCKELGEAISNNACGSSLFPSRHHESSLKVHDLQKADVKPIVDNDSDDSDSGIFRAKRPASLKAEKRNLKAVAVKHSEQQGLKRLKKVLPEGKSNRQQMNVRTSESSYKYNPVSHKVDIGISFKDRFARGNDTPIPVRYKKSGNEEVSMNMQQNHHRKERFQQTYREAPSIEIGSKRLKVRGPSFLGLESRLN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi842g00001 854 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Vivi842g00001 854 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Vivi842g00001 854 Pfam jmjN domain 90 122 IPR003349 -
Vivi842g00001 854 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 810 - -
Vivi842g00001 854 SMART JmjN_1 88 129 IPR003349 -
Vivi842g00001 854 Gene3D Cupin 89 442 - -
Vivi842g00001 854 SMART cupin_9 236 406 IPR003347 -
Vivi842g00001 854 FunFam Lysine-specific demethylase isoform A 84 433 - -
Vivi842g00001 854 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Vivi842g00001 854 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Vivi842g00001 854 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi842g00001 85 543 JUMONJI Transcription Factor Family AT1G08620 32.967 1.06e-61 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi842g00001 JmjC 2.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi842g00001 - - psat:127119779 1626.68