Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi839g00003 ATGGCTCCAATGTCTCTACCACCTGGTTTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTACTATTTAGAGAGAAAAATTACAGGTAGAATCATTGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCATGGGATTTGCCAGAAAAGTCATTTCTTCCAAGCAAGGATATGGAATGGTATTTTTACAGTCCAAGGGACAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACAGGAAAAGATAGAGCAGTGAATTCCCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGAATTAGAACCAACTGGGTTATGCATGAATATCGTCTTAATGAATCATACCCTGGTGCTTCTATCTCTTCTTTGAAGGATTCATATTCGTTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCGACAAAACCTAATGAAGAAGAACAAGCTGAAGATACAAAGAAGGAAATAATGGTGCAAGGGGAAGACTCAAGTGGAACTGAGATAATCGAAACTATGGATGAAAAAGTTATTAATAATAATAATAATAATGAATATCCAAAATTTCCATGTGACGCTTCATCTTCTGATGTCACTCAAGGAACATGCACACCAACAGAAACATGCAATAACAACAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGCTCAACTATTTCTTATCCTATTGGAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCCATAATCAATTTCCCCAAACACCTTTTATGATGGAAGATTTTCCACAAATGGAGACAAAATCAATATTGAAGCCAGATATGAGTGAAAACTGCTTTCTATATGACAAATACATAGACTGTATGAATGGAACACTAGAAGAAATCATTTCCTTGTGTTCCTCTCAAGATCATTCTGTGGCTTTTCCAATGCTATAG 1011 0.3591 MAPMSLPPGFRFHPTDEELVAYYLERKITGRIIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLNESYPGASISSLKDSYSLCRIFKKTIQIPTKPNEEEQAEDTKKEIMVQGEDSSGTEIIETMDEKVINNNNNNEYPKFPCDASSSDVTQGTCTPTETCNNNNITDDFHAQFACDEANSSTISYPIGNLFQDIEIPMYGGFHNQFPQTPFMMEDFPQMETKSILKPDMSENCFLYDKYIDCMNGTLEEIISLCSSQDHSVAFPML 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi839g00003 336 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vivi839g00003 336 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vivi839g00003 336 FunFam Nac domain-containing protein 86 15 160 - -
Vivi839g00003 336 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vivi839g00003 336 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vivi839g00003 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 218 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi839g00003 1 322 NAC Transcription Factor Family AT1G54330 52.454 2.04e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi839g00003 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi839g00003 - - gmx:100808325 516.924