Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi836g00003 ATGGGGAAATCAGGGGGTAGAAAGAAGAAAGGTGGTGCTGCTGCTGTTGTTGATAATTCAGTTTCTGCACAAACTCCGAATGGTGGTGTTGAATTGGATTCATCAATTTTTTTGAAAAAGGCTCATGAAATGAAGGAGGAAGGGAATAGGAGGTTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTAAACTCACGCCCAAAATTCATCCTGACAGAGCTGTTTTTCATAGCAATAGGGCTGCATGTTTGATGCAAATGAAACCGATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCGTTGTTTGTTCGGGCTCTTCTTCGGAGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAGGATGTGCAGTTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGGTTGAGGGCGGCGTTTGGGCCTCGGCAGGAAGCACAGCAGGATCTTCACAGTCGGCCTTCTCCTGCTGCTCTTGGGGCTTCTGCTGTTCGTGGTGCTCCTATTGCGGGGTTGGGCCCGTGTTTGCCCGCACGGCCTGGATCAAAGAAGGGGGTGAATTCTGGAGTTGGGGCTGTTGTTTCTCCTAATAACAAGGTTGACAAGTCTCAGAATGTTTTACTGCCGGTTGAGAATGGCTCGGAGACAACTAAGCGTCAGCAGAATGTTGTGTTGAAGCCTTTAAGTAATGGTCCTGCAGTGCAGCGTAACTCGAAAGATGTGAACCAGAAGGATATTCGTGGGCAGCTGTCGGAGGTTGCGATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCTCAGATGCCGGTGAAATGCAGTTTCAGAGTACTGAGAGATGTGGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACGTCTACGGATGAACTCAGATTAGCAGAGTCTTTTGTTGATAGCCATTTGCTGAAAGAGCCGGAATTAGATATAAGTGATTCCATTTCGGTGCTGAGACTTCATATTGTTGAAGTTAAACCGGAACAGGAGCCAGCTTTGTTGGAAGAAGAGGAAGAAAAGCTTGTTGAGAATGAAGTGACCAAGGGAGATGAGAATGGATCTCATTCTTCCCTTGGTGAATCTGTCCCTGAAGTTACAGAAGTTACCGAGGTTCCTGATACCGAGGTTGACAAGATAGCTGCAAAGAAGGATGCTTCCAAGGAAAAGCCAGGAGCCACCGGAGAAAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCCCATGTTGGTATTGACCCGGATGCTCATATTGACTTGCATGAACTTGGAATGGAGCTTTGTTCAGAGGCACTTGAAGAAACAGTAACTAGTGAGGAGGCTCAGGATTTATTCGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCAGCATTGGCATTCTTCAATTGGGGTAATGTACACATGTGCGCTGCTAGGAAGCGGATTCCCTTAGATGAAACCGCTGGAAAAGAGGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGATAAGTATTCTTTGGCAAGAGAAAAATACGAGGAAGCACTCGTGATCAAACCAGATTTCTACGAGGGGCTGTTGGCTCTAGGCCAGCAACAATTTGAAATGGCCAAACTCCATTGGTCTTTCGCAATTGCTAAGAAGATAGATTTAACAAGCTGGGATCCAACGGAAACTCTTCAATTGTTTAATAGTGCGGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGACCTAAAAGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGGAAGAAACATGGCAGTACTACTGAGGGCGAGGCTTCTGGTGTTGGCGGTCAGAGTGAGATATCTGCAGAAGAAGCCGCCGAGCAAGCAGTGGTCATGAGATCACAGATTCACCTCTTTTGGGGCAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTGGGAATGGATGGTTGGAAGAAAAACCTTGATGCTGCAACAGAAAGGTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCTTCAAATGGTGGTGATACAAAAGGCGATGATAAAAAAGTTCAGAGTACACTTGCCAACAAGACTGGTGAACTAGAGATCAATAAGGCAAGTCAAGAATGA 2322 0.4496 MGKSGGRKKKGGAAAVVDNSVSAQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALKLTPKIHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPLFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPGSKKGVNSGVGAVVSPNNKVDKSQNVLLPVENGSETTKRQQNVVLKPLSNGPAVQRNSKDVNQKDIRGQLSEVAIRWRPLKLVYDHDIRLAQMPVKCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSHLLKEPELDISDSISVLRLHIVEVKPEQEPALLEEEEEKLVENEVTKGDENGSHSSLGESVPEVTEVTEVPDTEVDKIAAKKDASKEKPGATGENECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDETAGKEVVAEQLQVAYDWVKDKYSLAREKYEEALVIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLQLFNSAEEKMKAATDMWEKLEEQRAKDLKDPNATKKEELLRRRKKHGSTTEGEASGVGGQSEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHSSNGGDTKGDDKKVQSTLANKTGELEINKASQE 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi836g00003 773 SMART tpr_5 115 148 IPR019734 GO:0005515
Vivi836g00003 773 SMART tpr_5 79 114 IPR019734 GO:0005515
Vivi836g00003 773 SMART tpr_5 41 74 IPR019734 GO:0005515
Vivi836g00003 773 MobiDBLite consensus disorder prediction 737 773 - -
Vivi836g00003 773 Gene3D Tetratricopeptide repeat domain 31 173 IPR011990 GO:0005515
Vivi836g00003 773 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vivi836g00003 773 CDD PB1 282 368 - -
Vivi836g00003 773 MobiDBLite consensus disorder prediction 632 673 - -
Vivi836g00003 773 ProSiteProfiles PB1 domain profile. 279 371 IPR000270 GO:0005515
Vivi836g00003 773 SUPERFAMILY TPR-like 38 172 IPR011990 GO:0005515
Vivi836g00003 773 Pfam PB1 domain 279 370 IPR000270 GO:0005515
Vivi836g00003 773 Coils Coil 613 633 - -
Vivi836g00003 773 PANTHER PROTEIN CLMP1 1 761 IPR044517 -
Vivi836g00003 773 MobiDBLite consensus disorder prediction 1 26 - -
Vivi836g00003 773 SUPERFAMILY TPR-like 493 589 IPR011990 GO:0005515
Vivi836g00003 773 MobiDBLite consensus disorder prediction 390 414 - -
Vivi836g00003 773 Gene3D - 281 351 - -
Vivi836g00003 773 MobiDBLite consensus disorder prediction 758 773 - -
Vivi836g00003 773 SMART PB1_new 279 371 IPR000270 GO:0005515
Vivi836g00003 773 SUPERFAMILY CAD & PB1 domains 277 343 - -
Vivi836g00003 773 MobiDBLite consensus disorder prediction 632 660 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi836g00003 41 159 Calmodulin-binding Proteins AT3G25230 30.769 1.01e-09 60.1