Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi836g00002 ATGAGTCAACTCGGTTTCATATTACACGAATCGCTCCGTCCTCAAAGAGAACCAAGAACGTTACTCGGTTTATTAACAGAACAAATGGACGGTGCAGATTCATCAACAACGAGAAGACGTAGTCTGAAAGAACGGTTCAGATTCACCGGTATCGGTGGTTGCTGTGGCGCCACCTGGGTTTTCCGTCCAATTATCCGACACGAACATCACCACAACCAACAACAACAACAACGGCAAGAGGAAGCAAGAGAAGGAGAAGCTAATGTGGAGCAACAAGAAGCACAGGTTCAAGATCCGGATCCGTCTAGTTCTTCTGGGATGAATCTTGCGGCGGCATTGGCGGCGGAGCGACAGATGAGGGGAACGGAGGAAACTAGCGGCGGAGAAAGAGCGACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAGGAAACGGAAGTGGAAAGTGAGAGTACGACGACGACGGTTATGGAGGGGAGTGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGATATTTTCTGA 639 0.493 MSQLGFILHESLRPQREPRTLLGLLTEQMDGADSSTTRRRSLKERFRFTGIGGCCGATWVFRPIIRHEHHHNQQQQQRQEEAREGEANVEQQEAQVQDPDPSSSSGMNLAAALAAERQMRGTEETSGGERATPWRVSLMKLLEETEVESESTTTTVMEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi836g00002 212 Coils Coil 72 95 - -
Vivi836g00002 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 211 IPR013083 -
Vivi836g00002 212 PANTHER OS01G0917900 PROTEIN 8 212 - -
Vivi836g00002 212 MobiDBLite consensus disorder prediction 70 88 - -
Vivi836g00002 212 Pfam Zinc finger, C3HC4 type (RING finger) 161 206 - -
Vivi836g00002 212 CDD RING-HC 164 201 - -
Vivi836g00002 212 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Vivi836g00002 212 MobiDBLite consensus disorder prediction 90 106 - -
Vivi836g00002 212 SUPERFAMILY RING/U-box 154 209 - -
Vivi836g00002 212 MobiDBLite consensus disorder prediction 70 106 - -
Vivi836g00002 212 SMART ring_2 164 201 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi836g00002 21 212 C3H Transcription Factor Family AT4G22250 53.465 1.41e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi836g00002 - - mtr:11446421 299.286