Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi832g00005 ATGGAGAAGAACAACGGCAAAGTCTGTTGGATTTGTGATAAGTGGTTCTCCAATGGGAAAGCCATTGGAGGCCACATGAGATCTCACTACGGCAAATTGCCAATGCCTCCAGCCAATTCAACAGATTTAACCCAGCATCCGATTTCTGCTTCCTCACTGACTTGCTATCCAGAAAAAAACCAAACAGAGAATGTTCGACCTATGAAACGTGACTTCTCTGCCATCTCTGCAAACTCAAACAGAGGAGACGGATCTGCACCCTACCCACAAAACCCAACCCGCAAGAGATCCAAATGCCACCGCCAACTTCATACAGTGGCCGATAGACAAGCAGCTGACGCTCTTTGTTTGTTGTCCGAAGGGGAGCCAAAGAGCGGTGGAGGAGAGTCGCTTGCTCAAGCTGACTCTCAAACCAGGTTCAAGTGCGATAGGTGCGGAAAAATGTTCCAATCTTACCAAGCTCTTGGTGGGCACAAAGCAAACCATAGCAAAACTAAGAATCTGGACCTAGGTGATGGATACCCACACTCGTGTTGA 537 0.4804 MEKNNGKVCWICDKWFSNGKAIGGHMRSHYGKLPMPPANSTDLTQHPISASSLTCYPEKNQTENVRPMKRDFSAISANSNRGDGSAPYPQNPTRKRSKCHRQLHTVADRQAADALCLLSEGEPKSGGGESLAQADSQTRFKCDRCGKMFQSYQALGGHKANHSKTKNLDLGDGYPHSC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi832g00005 178 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 167 IPR044303 GO:0006355
Vivi832g00005 178 Pfam C2H2-type zinc finger 9 30 - -
Vivi832g00005 178 Pfam C2H2-type zinc finger 139 164 - -
Vivi832g00005 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Vivi832g00005 178 SUPERFAMILY beta-beta-alpha zinc fingers 8 162 IPR036236 -
Vivi832g00005 178 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Vivi832g00005 178 MobiDBLite consensus disorder prediction 156 178 - -
Vivi832g00005 178 MobiDBLite consensus disorder prediction 75 99 - -
Vivi832g00005 178 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Vivi832g00005 178 MobiDBLite consensus disorder prediction 75 92 - -
Vivi832g00005 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Vivi832g00005 178 SMART c2h2final6 7 29 IPR013087 -
Vivi832g00005 178 SMART c2h2final6 140 162 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi832g00005 9 166 C2H2 Transcription Factor Family AT3G60580 29.412 1.72e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi832g00005 zf-C2H2_6 1.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi832g00005 - - vvo:131636940 374.785