Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi832g00003 | ATGGAGAACAACGGCAAGGTCTGCGGGATTTGTGATAAGTGGTTCTCCAGTGGGAAAGCTTTTGGAGGCCACATGAGATCTCACTACGTCAAATTGCCGATTCCTCCAAAGCTTGAAACTAACAATCAAGTACAAGGCGATTCGGCCAATTCAACCCAGCATCCCATTCAATCTGCTTCCTCGCTGAGTTGCCATCTCAAAGAAAAACGCACAGAGAATTTCGGATCTATGAAACGCAACTTGTCTGCCATCTCTGCAAGCTCAAACTCAAACAGTGAAAACAAATCCGAGTCCTACCCACAAACCCCAACCCACAAAAGATCTAAAAGCCTCCATGAACAAGATGAAGCGGACGATACAAAATCTCTGTCAGAACAAACAAGTCCAATAAGTGATACTAAAATTCCTCGGGGTGCTTGGGTAGTGTGGGATTTTTACGAATTCGCGCAGCAAAAGGAAGAGGCCAAGGCACAAAAAATAAAGGAAATCAACGAAATGAAGGCAAAAGACAGTGGAAGCAAGAGAGGTGACTTGCTTGCTCAAGCTGACTCTCAAACCAGGATCAAGTGTGAGAGGTGTGGAAAAGAGCTCCGATCTTTTCAAGCTCTTGGTGGGCACAGAGCACACTGCAGAAATGACAAAGATGATGACTTTATTGATCGGAAACCTTTTCAATGCCCGTACTGTAACAGATTTTTCAAGTCTGCTCAAGCACTCGGTGGACACAGGAGGGTACACTTTTCCGTTGCTAATGAATTTTGA | 762 | 0.4462 | MENNGKVCGICDKWFSSGKAFGGHMRSHYVKLPIPPKLETNNQVQGDSANSTQHPIQSASSLSCHLKEKRTENFGSMKRNLSAISASSNSNSENKSESYPQTPTHKRSKSLHEQDEADDTKSLSEQTSPISDTKIPRGAWVVWDFYEFAQQKEEAKAQKIKEINEMKAKDSGSKRGDLLAQADSQTRIKCERCGKELRSFQALGGHRAHCRNDKDDDFIDRKPFQCPYCNRFFKSAQALGGHRRVHFSVANEF | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi832g00003 | 253 | Gene3D | Classic Zinc Finger | 149 | 251 | - | - | |
| Vivi832g00003 | 253 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 224 | 246 | IPR013087 | - | |
| Vivi832g00003 | 253 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 248 | IPR044303 | GO:0006355 | |
| Vivi832g00003 | 253 | Coils | Coil | 149 | 169 | - | - | |
| Vivi832g00003 | 253 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 226 | 246 | IPR013087 | - | |
| Vivi832g00003 | 253 | MobiDBLite | consensus disorder prediction | 38 | 64 | - | - | |
| Vivi832g00003 | 253 | MobiDBLite | consensus disorder prediction | 84 | 99 | - | - | |
| Vivi832g00003 | 253 | MobiDBLite | consensus disorder prediction | 84 | 131 | - | - | |
| Vivi832g00003 | 253 | Pfam | C2H2-type zinc finger | 189 | 209 | - | - | |
| Vivi832g00003 | 253 | Pfam | C2H2-type zinc finger | 8 | 28 | - | - | |
| Vivi832g00003 | 253 | Pfam | C2H2-type zinc finger | 224 | 246 | - | - | |
| Vivi832g00003 | 253 | SUPERFAMILY | beta-beta-alpha zinc fingers | 7 | 246 | IPR036236 | - | |
| Vivi832g00003 | 253 | MobiDBLite | consensus disorder prediction | 100 | 122 | - | - | |
| Vivi832g00003 | 253 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Vivi832g00003 | 253 | SMART | c2h2final6 | 188 | 209 | IPR013087 | - | |
| Vivi832g00003 | 253 | SMART | c2h2final6 | 224 | 246 | IPR013087 | - | |
| Vivi832g00003 | 253 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Vivi832g00003 | 253 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi832g00003 | 8 | 253 | C2H2 Transcription Factor Family | AT1G02030 | 28.409 | 4.85e-17 | 76.6 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vivi832g00003 | zf-C2H2_6 | 5.3e-06 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi832g00003 | - | - | mtr:112420782 | 251.906 |