Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi828g00004 ATGGTCGAAAATGGAGAACAAATTCGAAGTCCCGTAATCCGAAAGAAAGCGGCTTTGATGGAATCAAATAGCCAAAACATGGCTTCTTTTATCAGTCCTAGGTTCAAATCTGCTGCTGCTATGGCAGGTTGGGATGAAGAAGCACTTATGCTTGCCGCTCTCATTGTTGAAGATACCCCGGATCGAGATTCCAAACAAAAGAAACGGCTTGTTTTGAATTCCAAATCGCCGCTATCCAATTCATCAAGGAAACGTAGAGCTTTGAGGAATCCACAACCGATTGTTCTTGATCTTGATGAAGATGAAACCCCCAAAAAGGACAGTGGGAAGAAGAAGAGAGAAAAGAAAAATTGTGTCGGCGAAGAAAGTAAAGTTGGAGAAAAGGAATTGACTAAGAAGGGATCTGATGTTAATTCTAATAGTTCTGGTCTTCCTTGTATGGATAAGCTAAGGGAGGAGCTTTCATGTGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCATAGCTTTTGTAGAAAATGTCTGAAATCTGCTGGAGACAAGTGTGGCAAAAAGTGTCCCAAATGCAGGCAATTGATAAGCAATGGACGATCGTGCACGGTGAACACCGTTCTCTGGAACACGATTCAACTTCTATTTCCTCAAGAAATTGAAGCAAGGAAAGTTGCTGCTGCTAGCACCATAAATAATAGACACGCTGTTCAGAATCCAATTCCAGAAAAAACATTTTATACTAGCACAAGGAATAGAAGTTTACAACCATATCCATCCAGTAGGGGTATGAATTCAAGGAGAAACGAGGCAGCGACAACACAAGATGAAGAGGATGCTGCATTGGCCAGAAGGCTGCAAAGAGAAATTGATAGAGAAAACAACAACCGTAGAACTTCAACATTATCATCTATGGTTAGAGCGAGGTCAAGAAGAGGGGTTTCTAACCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAAATGAGTTTATGCAAGCTTTTAGAAGTAGCAGCCAGGAACCGTCATCTTCTTCTTCCTCCACATTATTAGCTGGACCAAATTTGAGGGCTATGGCAACTAGAGCCATGAATCTTCGTAATAGAGAGAGAAGGGTTTAA 1131 0.4147 MVENGEQIRSPVIRKKAALMESNSQNMASFISPRFKSAAAMAGWDEEALMLAALIVEDTPDRDSKQKKRLVLNSKSPLSNSSRKRRALRNPQPIVLDLDEDETPKKDSGKKKREKKNCVGEESKVGEKELTKKGSDVNSNSSGLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLKSAGDKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAAASTINNRHAVQNPIPEKTFYTSTRNRSLQPYPSSRGMNSRRNEAATTQDEEDAALARRLQREIDRENNNRRTSTLSSMVRARSRRGVSNQDEDAAFALRLQRNEFMQAFRSSSQEPSSSSSSTLLAGPNLRAMATRAMNLRNRERRV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi828g00004 376 MobiDBLite consensus disorder prediction 299 313 - -
Vivi828g00004 376 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 IPR018957 GO:0046872
Vivi828g00004 376 MobiDBLite consensus disorder prediction 338 358 - -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 95 134 - -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 250 272 - -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 250 319 - -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 71 87 - -
Vivi828g00004 376 SMART ring_2 156 194 IPR001841 -
Vivi828g00004 376 PANTHER UNCHARACTERIZED 318 368 - -
Vivi828g00004 376 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 60 141 - -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 338 357 - -
Vivi828g00004 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 225 IPR013083 -
Vivi828g00004 376 MobiDBLite consensus disorder prediction 273 298 - -
Vivi828g00004 376 SUPERFAMILY RING/U-box 148 219 - -
Vivi828g00004 376 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi828g00004 70 250 C2H2 Transcription Factor Family AT5G39550 27.027 1.17e-06 48.5