Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi827g00012 ATGCATACCAAGGACGTTTGTTCTTCCTCCTCCCAAACCGGATTCGGCGACGGCCTTGAGCCTGCCGGCAACATGCACACCGATGCCGACGCGTTTGCTTCGTCTGGAACTGAGTACGACTCGTGCGTGATACAGGAGCGTCAAGATTTAGTGAATTGTTTGAGTATGTGTCTCAGGAGCCTCGTGGAGACTTCCAATGAGGTTGAAACTATGCAGAAAAAGATCGGAGAACTCCGTGGCGTGATGAAAGAGATGCAGAAGAATCTGAACGTCTTATTTCAGGCTACACCGGAGAACCGATTTGGCGGTGATGGTTCCTCCCTCCAGACACTGTTGAACAATTTCAATCGCTTGAATGTTGGCGATGGAAAAGAAAGCTGTGCTGATTGGAATAACAATAAGACGGAGCTGTGCAATAAATGGCAGAAAACTGGAACATGCCATTACGGAAACAACTGCCAATACGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCAGCCATGA 510 0.4961 MHTKDVCSSSSQTGFGDGLEPAGNMHTDADAFASSGTEYDSCVIQERQDLVNCLSMCLRSLVETSNEVETMQKKIGELRGVMKEMQKNLNVLFQATPENRFGGDGSSLQTLLNNFNRLNVGDGKESCADWNNNKTELCNKWQKTGTCHYGNNCQYAHGIGELRPVIRQP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi827g00012 169 MobiDBLite consensus disorder prediction 1 17 - -
Vivi827g00012 169 SUPERFAMILY CCCH zinc finger 131 164 IPR036855 GO:0046872
Vivi827g00012 169 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Vivi827g00012 169 FunFam zinc finger CCCH domain-containing protein 15-like 128 165 - -
Vivi827g00012 169 Coils Coil 68 88 - -
Vivi827g00012 169 Gene3D - 127 165 - -
Vivi827g00012 169 MobiDBLite consensus disorder prediction 1 29 - -
Vivi827g00012 169 PANTHER CCCH ZINC FINGER/TIS11-RELATED 7 169 IPR045877 GO:0003729
Vivi827g00012 169 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
Vivi827g00012 169 SMART c3hfinal6 132 159 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi827g00012 134 169 C3H Transcription Factor Family AT1G68200 80.556 2.74e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi827g00012 zf-CCCH 2.4e-11 CL0537