Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi825g00002 ATGGTTTCTGAAGCTGAAGCTTCTCAACTTTCTTATTTGTTTGAAAGAATGATAAGAACCAGAGACATGTCTCTCTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTATCAATTCGACGAAACAACGATGAAGACTCAGATCAAGAAAGAGAGCGTAACGAAGATTCCAACCGTCAAAGATTAATCTTGGTGAACCCATCAACACAACGTATTGTTGTAATCAACGAAGTTTCAAGTCTCGAAACTCTGCTTCATGAACTTGGAAGTACTACTACACATAATGGTCAACCACCAGCTTCAAAGAAGTCAATAGATAGTATGAAAAGGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAGGAGTTTGAGGTTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCATAGGTTTCATGGTAATTGTATTGAGAAGTGGTTAAGAATTCATGGGTCCTGTCCTGTTTGTAGGTTTCAAATGCAATAG 498 0.3795 MVSEAEASQLSYLFERMIRTRDMSLFFPFMLRLYGLSIRRNNDEDSDQERERNEDSNRQRLILVNPSTQRIVVINEVSSLETLLHELGSTTTHNGQPPASKKSIDSMKRVEIEESDDGECVVCLEEFEVGGVVKEMPCKHRFHGNCIEKWLRIHGSCPVCRFQMQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi825g00002 165 FunFam E3 ubiquitin-protein ligase RNF181 87 165 - -
Vivi825g00002 165 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Vivi825g00002 165 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 164 - -
Vivi825g00002 165 SMART ring_2 120 160 IPR001841 -
Vivi825g00002 165 Pfam Ring finger domain 119 161 IPR001841 -
Vivi825g00002 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 165 IPR013083 -
Vivi825g00002 165 SUPERFAMILY RING/U-box 102 164 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi825g00002 1 164 C3H Transcription Factor Family AT1G26800 47.953 7.88e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi825g00002 - - vvo:131606629 302.367