Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi818g00003 ATGACAAGTTGCCTCCCAAATGTAATATTTATTCGCAAGATCGGGGACGAGAAATCACTTCCCAAAGATGCTACTATTGAAGATGACAGAGAAAAGACACAAATTGCTAAGGTTTCTCCAAAGCATGTCTGCAAATATTGGATGAATGGCGATTGTGTTCGTGGTGAACATTGCCGGAATTTACATTCCTGGTTTTATGGTGATGGCTTTTCCACATTAGTAAAGCTTCAAGGACACAAGAAGCTTGTCACTGGAATTGCACTTCCACATGGATCAAACAAACTTTATTCTAGCAGCACCGATGGGACACTTCGGACATGGGACTGTGTTACTGGTCAATGTACTAATTTGACGAATCTTGGTGCTGAAGCTACTTCTTTGATCAGTGAGGGCCCGTGGATTTTTGTTGGTCTTCCTAACATTGTCAAGGCACGGAATATGCAAATTGCTTCACATTTAACTCTTGATGGACCTAAGGGACGAGTCCTTGCCATGGTTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTTTGCATGGAGAGGCAGTTCTAAATCCAATTCCCCTTTTGAACTGGTTGCATCACTACGCGGACACACTAAATCTGTTGTTTGCCTGGCTGTTGGATGTAACATGATGTTGTACTCAGGATCCAAGGATCAAAGCGTCCAGGTTTGGGACCTAGACAAATTTGAGTGTAAAATGACACTCAATGCGCATACAGGAGAAGTCACATCCCTTATTTGTTGGGACAAATTCTTGCTATCCGGTTCATCAGACTGCACTATCAAGGTCTGGTATAAAACCGTCGAGGATACTTTGGAAGTTGCATATTCACACAATGTAGAAAACATTTTTTAA 873 0.4204 MTSCLPNVIFIRKIGDEKSLPKDATIEDDREKTQIAKVSPKHVCKYWMNGDCVRGEHCRNLHSWFYGDGFSTLVKLQGHKKLVTGIALPHGSNKLYSSSTDGTLRTWDCVTGQCTNLTNLGAEATSLISEGPWIFVGLPNIVKARNMQIASHLTLDGPKGRVLAMVVGNDTLLAGAEDGVIFAWRGSSKSNSPFELVASLRGHTKSVVCLAVGCNMMLYSGSKDQSVQVWDLDKFECKMTLNAHTGEVTSLICWDKFLLSGSSDCTIKVWYKTVEDTLEVAYSHNVENIF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi818g00003 290 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Vivi818g00003 290 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Vivi818g00003 290 PRINTS G protein beta WD-40 repeat signature 95 109 IPR020472 -
Vivi818g00003 290 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 76 108 - -
Vivi818g00003 290 Gene3D - 125 275 IPR015943 GO:0005515
Vivi818g00003 290 ProSiteProfiles Trp-Asp (WD) repeats profile. 76 117 IPR001680 GO:0005515
Vivi818g00003 290 PANTHER - 37 287 IPR044715 -
Vivi818g00003 290 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
Vivi818g00003 290 SMART WD40_4 193 231 IPR001680 GO:0005515
Vivi818g00003 290 SMART WD40_4 69 108 IPR001680 GO:0005515
Vivi818g00003 290 SMART WD40_4 234 271 IPR001680 GO:0005515
Vivi818g00003 290 SMART WD40_4 148 185 IPR001680 GO:0005515
Vivi818g00003 290 SUPERFAMILY WD40 repeat-like 68 271 IPR036322 GO:0005515
Vivi818g00003 290 Gene3D - 35 124 IPR015943 GO:0005515
Vivi818g00003 290 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 233 - -
Vivi818g00003 290 SMART c3hfinal6 39 64 IPR000571 GO:0046872
Vivi818g00003 290 ProSiteProfiles Zinc finger C3H1-type profile. 43 65 IPR000571 GO:0046872
Vivi818g00003 290 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 270 IPR001680 GO:0005515
Vivi818g00003 290 Pfam WD domain, G-beta repeat 195 231 IPR001680 GO:0005515
Vivi818g00003 290 Pfam WD domain, G-beta repeat 236 270 IPR001680 GO:0005515
Vivi818g00003 290 Pfam WD domain, G-beta repeat 73 108 IPR001680 GO:0005515
Vivi818g00003 290 SUPERFAMILY CCCH zinc finger 41 63 IPR036855 GO:0046872
Vivi818g00003 290 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 240 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi818g00003 40 232 Eukaryotic Initiation Factors Gene Family AT2G46290 25.000 4.54e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi818g00003 WD40 0.00045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi818g00003 - - vvo:131636798 603.208