Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi814g00001 ATGAGGAAGAAAAGTATTCCATATTGTTCTTTTCAATATCCATCTTGGTGCCATGATGATAAACACACACAACCTTTAAGAGGGAATCAAAGTGAGAATGACAATTCTGAAAAAGAGAAACATGTATGTCATGTTTGCAGTAAAGATTTTCCGTCCAAAAAGGCTTTGAATGGACACATGAGAGTACACAAAAAAGATAACAAGGCTATTCCTCCGCCACCAATTTCATCTCCTCGCAATATTGACTTATCAAAATATTTGCCACCAAGATCGCATAAATGCAGCAATAGGAATAGTGATATCAATACTATTGATAACGATCATGGTGAAAGGAAAAGGCTGAAGCTTCACGAAAATATTGTTAACGAGAAGATCAAGGAACAAGCTTCAACGAAGCCAATTACCGGTCATGTTAGCGGCATTGATGAAACAGTGATGGATATTGGTGCTGAGATTCAAGATTGTTAA 468 0.3675 MRKKSIPYCSFQYPSWCHDDKHTQPLRGNQSENDNSEKEKHVCHVCSKDFPSKKALNGHMRVHKKDNKAIPPPPISSPRNIDLSKYLPPRSHKCSNRNSDINTIDNDHGERKRLKLHENIVNEKIKEQASTKPITGHVSGIDETVMDIGAEIQDC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi814g00001 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vivi814g00001 155 Gene3D Classic Zinc Finger 19 73 - -
Vivi814g00001 155 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
Vivi814g00001 155 MobiDBLite consensus disorder prediction 17 38 - -
Vivi814g00001 155 MobiDBLite consensus disorder prediction 20 38 - -
Vivi814g00001 155 SMART c2h2final6 41 63 IPR013087 -
Vivi814g00001 155 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vivi814g00001 155 Pfam C2H2-type zinc finger 41 65 - -
Vivi814g00001 155 MobiDBLite consensus disorder prediction 54 106 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi814g00001 zf-C2H2_6 9.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi814g00001 - K19871 vvo:131636698 266.544