Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi811g00018 ATGGATCCTCCAACAAAGAGTTGGAGCATCCATACCCGACCCGAAATAACATCCCAATACGAAATCCTCGAACACATCGGATCCGGATCCTACGCCGACGTCTACCGTGGCCGGCGAATCTCCGACGGGAGAATCGTAGCCCTTAAAGAAGTTCACGATCATCAATCAGCATCGAGAGAAATCGACGCTTTGCGGATTCTTCGGGGCTCCGAAAACGTTGTGTTCATGCATGAATTCTTCTGGCGAGAAGATGAAGATGCTGTGATCGTTCTCGAGTTTCTGAAGACCGATCTCGCTACTGTGATTAAGGAGGCTGGTAGTGAAGGTCTTGCTGTTGGAGAGGTTAAAGGGTGGATGGTGCAGATTCTTAGTGGGGTTCATGCTTGTCATCGGAATATGATCGTGCATAGAGACTTGAAGCCGGAGAATTTTTTGATTTCGGATGATGGGGTTCTCAAGTTGGCAGATTTTGGACAGGCAAGGATACTTTTGGAGTCTGGATTTGATGCATCAAATAGTGAAAGTTCATCCCAATATGCTCGTGATGCTATTCCCTTATCAGAAAATTCAAACCGGACTGGATTTGAAAATCAAGAGGAGGAGGAAAGAATCAGTCATGAGGAATATTTTAGAGTATTAGATGAGCTGAAAATTAAGAGTCATACATATGATACTGATGATAAGGACACAAACACGTACGACGGTAACAACTCGTGCCTGGCAACATGCACGATTAGCAATGAGGACGATGATGATGTTTGGAAGAATTCTTTGCCATATGAAGCAGATGAAGAAGGAGGATATGAAGAGCTTGGTTTTCTCACATCATGTGTTGGAACAAGATGGTTTAAGGCTCCGGAACTACTTTATGGATCGACTAGTTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCTGAGTTGTTTACATTGAAGCCTTTGTTTCCTGGAACAGGTGATATAGATCAGATTAGTAGAATCATTAGTGTTTTGGGTAATCTCAATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAAGAATTTCTTTTACTAAGGTGGAAAACCCTATTGGTCTTGAAGCATGCATGCCGAATCGTTTGCATGATGAAGTTTCCTTGGTGAAAAAGTTGGTTTGTTATGATCCAGCTAGGAGAGCCACTGCGGCGGAGTTACTTCATGACAAGTACTTCTCTCAGTTGTGA 1221 0.4292 MDPPTKSWSIHTRPEITSQYEILEHIGSGSYADVYRGRRISDGRIVALKEVHDHQSASREIDALRILRGSENVVFMHEFFWREDEDAVIVLEFLKTDLATVIKEAGSEGLAVGEVKGWMVQILSGVHACHRNMIVHRDLKPENFLISDDGVLKLADFGQARILLESGFDASNSESSSQYARDAIPLSENSNRTGFENQEEEERISHEEYFRVLDELKIKSHTYDTDDKDTNTYDGNNSCLATCTISNEDDDDVWKNSLPYEADEEGGYEELGFLTSCVGTRWFKAPELLYGSTSYGLEVDLWSLGCVFAELFTLKPLFPGTGDIDQISRIISVLGNLNEEAWNGCSKLPDYGRISFTKVENPIGLEACMPNRLHDEVSLVKKLVCYDPARRATAAELLHDKYFSQL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi811g00018 406 Pfam Protein kinase domain 20 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi811g00018 406 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi811g00018 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vivi811g00018 406 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vivi811g00018 406 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi811g00018 406 Gene3D Transferase(Phosphotransferase) domain 1 269 405 - -
Vivi811g00018 406 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi811g00018 406 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vivi811g00018 406 Gene3D Transferase(Phosphotransferase) domain 1 10 194 - -
Vivi811g00018 406 SUPERFAMILY Protein kinase-like (PK-like) 12 405 IPR011009 -
Vivi811g00018 406 PANTHER CELL DIVISION PROTEIN KINASE 19 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi811g00018 4 405 Core Cell Cycle Gene Families AT4G28980 62.291 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vivi811g00018 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi811g00018 - - tpra:123883153 702.975