Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi80g00012 ATGATGAGTAGTAATAAGGGGATTCCGATACCTCGGAGTACTCGAGTTGGGAAGTATCAGTTGGGGAAGACGATTGGAGAAGGAAGTTTTGCGAAGGTGAAGTTGGCGAAGAATGTTGAGAATGGAGAGTTTGTGGCTATTAAGATTCTTGATCGTAATCATGTGCTTCGACATAATATGATGGATCAGCTGAAGAGAGAAATTTCGGCGATGAAGATTATTAATCATCCGAATGTTGTTAAGATATTTGAGGTGATGGCGAGCAAGACGAAGATTTATATTGTCTTGGAGTTGGTTAGTGGAGGAGAGTTATTCGATAAAATCGCTACAAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAGCTAATCAATGCGGTTGATTACTGTCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCGGAGAATCTTCTTTTGGACACAAAGGGTGTTCTTAAAGTTTCAGATTTTGGATTAAGTATATATTCACAGAAGGAAGGTGAACTTCTCCGCACCGCTTGTGGAACACCGAATTACGTTGCGCCTGAGGTGATTAATGATAGAGGTTATGTTGGTTCTACATCTGATATATGGTCCTGTGGAGTTATTCTCTTTGTACTTATGGCCGGGTACTTACCGTTCGACGAGCCGAATCAAATTGCACTTTATAGAAAAATTGGTAGGGCTGAGTTCACATGTCCACCGTGGTTTTCGCCCGAGGCAAAGAAACTGCTCAAGGCTATACTTAATCCAAACCCTCTCACGAGGATAAAAATTCCGGAACTCTTGGAAGATGAATGGTTCAAAAAAGGATACAAGCCCGCATCTTTTACCGAGCAAGATGTCAATGTAGACGATGTTGCTGCTGCTTTCAACAATTCTAAGGAAAATCTTGTGACAGAGACGAAAGAGAAACCCGTGTCAATGAATGCTTTCGAGCTTATTTCTAGATCAGAAAGCTTCAATCTTGACAATTTATTCGAGAAGCAAAAGGGAGTTGTAAAGCGCGAAACTCATTTCACTTCACAACGCCCTGCGAATGAAATTATGTCTAAGATCGAGGAAGCTGCAAAACCTCTCGGGTTTAATGTTCACAAGCGAAATTACAAGATGAAGCTGCAGGGTGATAAAAGTGGAAGGAAAGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCCTGCATATGGTGGAGCTGCGAAAGACGGGCGGCGACACACTAGAGTTTAACAAGTTTTACAAAATATTTTCATCAGGGTTGGAAGACATAGTGTGGCACAATGAGAAAAAATAA 1314 0.4155 MMSSNKGIPIPRSTRVGKYQLGKTIGEGSFAKVKLAKNVENGEFVAIKILDRNHVLRHNMMDQLKREISAMKIINHPNVVKIFEVMASKTKIYIVLELVSGGELFDKIATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDTKGVLKVSDFGLSIYSQKEGELLRTACGTPNYVAPEVINDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNQIALYRKIGRAEFTCPPWFSPEAKKLLKAILNPNPLTRIKIPELLEDEWFKKGYKPASFTEQDVNVDDVAAAFNNSKENLVTETKEKPVSMNAFELISRSESFNLDNLFEKQKGVVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFNKFYKIFSSGLEDIVWHNEKK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi80g00012 437 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi80g00012 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 418 - -
Vivi80g00012 437 SUPERFAMILY Protein kinase-like (PK-like) 16 284 IPR011009 -
Vivi80g00012 437 CDD CIPK_C 314 429 - -
Vivi80g00012 437 FunFam Non-specific serine/threonine protein kinase 11 98 - -
Vivi80g00012 437 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vivi80g00012 437 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Vivi80g00012 437 FunFam Non-specific serine/threonine protein kinase 307 433 - -
Vivi80g00012 437 Gene3D Kinase associated domain 1, KA1 307 433 - -
Vivi80g00012 437 Gene3D Transferase(Phosphotransferase) domain 1 99 300 - -
Vivi80g00012 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vivi80g00012 437 FunFam Non-specific serine/threonine protein kinase 12 311 - -
Vivi80g00012 437 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Vivi80g00012 437 SMART serkin_6 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi80g00012 437 Pfam NAF domain 310 370 IPR004041 GO:0007165
Vivi80g00012 437 ProSiteProfiles Protein kinase domain profile. 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi80g00012 3 435 CBL-interacting serine-threonine protein kinases AT1G01140 73.469 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi80g00012 Pkinase 7.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi80g00012 - - gmx:100794136 764.607