Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi80g00006 ATGTCTCAACAAAGACAACCTCATATGATGAGTGGTGGTAACAACCAAGATCAATATAGTGACACAACATTTACCAAAATTTTTGTTGGTGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGAGAGATCTTAGAAGCTGTTGTTATCACTGATAAGTATACTGGGAGATCTAAAGGTTATGGTTTTGTGACATTTAAGGATCCTGAGGCAGCTATAAGAGCATGTCAGAATCCCTCTCCTGTTATTGATGGAAGAAGAGCTAATTGCAATATTGCTTCTCTTGGTGCTAACAAGAATAGATCAGTAACTCTTCAACATGGAAGGTTTAGGCCTCCACATGGAGTGATGGCACCAGTTCCTTATCATGGATCTTCATCATCCACAATTTTCCATCAACCTACCACTAGACAGTACACATTACCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACCTTGTATCCTCCGAACTATTACAATGTGTATGGAGTTCAACAATATTCACCTTACTACCCATCTGTTGGAGGTGCTGGAACAATGGGGTTGGTGCAAAATATGTACCCTTACTATGGACAATATGCACAAAATATCCATGGTCCTGGTTTTGGAGTTCAGTACCCTCAAATGACACAGATTCCGGTTTTGTCTCAGAATTATGGTTCCACTGGAATATTGTCATTTCCTTCTTCAGCAGCATTGCCAACCATTACTACAGCAACCGAAGCCGCAACCGCAACTACTACGATAGCAACAAACGTGGTAATTACCGAGGTTACCGGTTCACAAGCTACTGAAACAACAGACTCTGAACAACAACATTCAACAACTTGA 861 0.4065 MSQQRQPHMMSGGNNQDQYSDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSVTLQHGRFRPPHGVMAPVPYHGSSSSTIFHQPTTRQYTLPYSAYGYSGYSQDTLYPPNYYNVYGVQQYSPYYPSVGGAGTMGLVQNMYPYYGQYAQNIHGPGFGVQYPQMTQIPVLSQNYGSTGILSFPSSAALPTITTATEAATATTTIATNVVITEVTGSQATETTDSEQQHSTT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi80g00006 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Vivi80g00006 286 CDD RRM_RBM24_RBM38_like 25 100 - -
Vivi80g00006 286 SMART rrm1_1 26 98 IPR000504 GO:0003723
Vivi80g00006 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 117 IPR000504 GO:0003723
Vivi80g00006 286 Gene3D - 1 115 IPR012677 -
Vivi80g00006 286 PANTHER BOULE-RELATED 8 246 - -
Vivi80g00006 286 SUPERFAMILY RNA-binding domain, RBD 8 113 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi80g00006 21 101 C2H2 Transcription Factor Family AT2G19380 43.210 3.52e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi80g00006 - - pvu:PHAVU_010G118600g 400.208